Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.0e-168 596.7 295 100.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-126 456.1 280 80.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.7e-123 446.4 268 79.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 6.3e-123 444.5 282 77.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.0e-121 439.5 282 77.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.5e-121 438.7 272 77.2
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.5e-121 438.7 276 78.6
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.5e-121 438.3 258 81.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 4.5e-121 438.3 285 75.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.9e-121 438.0 248 83.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 5.9e-121 438.0 244 84.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 5.9e-121 438.0 244 84.0
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 7.7e-121 437.6 252 82.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.3e-120 436.0 270 77.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.9e-120 435.6 300 70.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.0e-120 434.9 279 75.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 8.6e-120 434.1 247 82.6
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 8.6e-120 434.1 257 80.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 8.6e-120 434.1 281 76.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 8.6e-120 434.1 320 70.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 8.6e-120 434.1 277 75.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 8.6e-120 434.1 278 75.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-119 433.7 242 84.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.9e-119 433.0 248 80.6
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.5e-119 432.6 293 73.7
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.3e-119 432.2 261 79.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 4.2e-119 431.8 242 83.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.5e-119 431.4 279 73.8
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.2e-119 431.0 243 83.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.2e-119 431.0 289 74.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.2e-119 431.0 298 70.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.2e-119 431.0 298 70.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 7.2e-119 431.0 243 83.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 9.5e-119 430.6 285 72.3
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 9.5e-119 430.6 283 74.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-118 430.3 275 75.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.2e-118 430.3 242 83.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.6e-118 429.9 242 83.1
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.1e-118 429.5 282 73.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.1e-118 429.5 240 82.5
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.8e-118 429.1 258 78.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 6.1e-118 427.9 242 82.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 6.1e-118 427.9 279 74.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.0e-117 427.2 258 77.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.4e-117 426.8 273 74.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-117 426.8 241 83.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.4e-117 426.8 277 74.4
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.8e-117 426.4 270 74.4
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.8e-117 426.4 258 79.5
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.3e-117 426.0 254 79.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.3e-117 426.0 259 78.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.2e-117 424.9 296 69.9
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 5.2e-117 424.9 258 76.4
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 8.9e-117 424.1 250 79.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.2e-116 423.7 246 80.1
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.5e-116 423.3 289 70.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.5e-116 423.3 279 73.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.5e-116 423.3 242 82.2
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.0e-116 422.9 282 72.3
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.4e-116 422.2 288 69.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.3e-115 420.2 267 74.2
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.3e-115 420.2 248 79.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.7e-115 419.9 260 76.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 6.3e-115 417.9 259 77.2
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 8.3e-115 417.5 283 71.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.4e-114 416.8 274 72.3
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.1e-114 415.6 276 72.5
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 9.2e-114 414.1 277 72.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.2e-113 413.7 271 72.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.6e-113 413.3 301 69.4
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.5e-113 412.1 304 68.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.0e-112 410.6 261 76.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.3e-112 409.5 248 76.6
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.0e-112 408.3 271 71.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.0e-112 408.3 244 78.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 6.6e-112 407.9 242 78.1
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.9e-111 406.4 255 74.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.9e-111 406.4 242 76.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.9e-111 406.4 241 78.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 9.5e-111 404.1 242 77.7
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-110 403.7 277 69.0
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.6e-110 403.3 294 67.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.7e-110 401.7 276 69.2
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.4e-109 400.2 259 71.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.8e-109 399.8 272 69.5
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.8e-109 397.9 259 71.0
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 8.9e-109 397.5 397 55.7
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.2e-108 397.1 296 68.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 9.8e-108 394.0 260 71.2
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 9.8e-108 394.0 262 72.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 8.3e-107 391.0 242 74.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 9.2e-106 387.5 273 69.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 7.8e-105 384.4 260 71.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.0e-104 381.7 236 78.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.6e-102 375.6 288 66.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.1e-101 372.5 388 54.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.0e-101 372.1 278 65.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.5e-100 370.2 212 81.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.2e-97 360.5 243 70.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.3e-96 357.1 212 77.8
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.3e-96 357.1 301 60.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-96 356.3 241 71.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 5.6e-95 351.7 284 65.5
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.2e-94 350.5 249 69.5
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.9e-93 344.4 259 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.7e-91 340.1 264 63.6
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.2e-90 335.9 242 69.8
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 4.1e-90 335.5 216 74.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 5.6e-87 325.1 283 56.9
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.2e-81 307.4 208 68.8
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-80 303.5 231 65.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.4e-77 293.1 167 83.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.2e-74 282.7 256 53.1
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.2e-74 282.3 212 61.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.5e-71 273.9 176 75.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.1e-69 267.7 164 76.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-68 263.8 224 60.3
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 6.4e-67 258.5 159 75.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.4e-66 257.3 273 47.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 5.4e-66 255.4 251 53.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.6e-65 253.8 144 84.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.8e-61 240.4 206 62.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.7e-59 233.8 191 62.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 6.4e-59 231.9 237 44.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 8.4e-59 231.5 261 52.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.5e-58 229.9 142 76.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.3e-55 219.5 137 73.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.8e-53 213.8 130 76.9
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.4e-53 213.4 130 81.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-50 204.5 167 61.1
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 7.1e-50 201.8 112 83.0
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 7.1e-50 201.8 238 44.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.1e-49 200.3 127 74.0
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.1e-49 200.3 146 69.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.7e-47 192.2 111 76.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.8e-46 189.1 110 82.7
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-45 186.0 135 66.7
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.1e-45 186.0 135 66.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.3e-45 185.7 99 82.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.5e-43 178.7 246 39.0
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-40 171.0 163 55.2
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.7e-38 164.1 92 80.4
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 8.2e-38 161.8 219 41.1
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 6.9e-37 158.7 153 55.6
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.1e-34 151.4 213 40.4
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.4e-34 151.0 77 88.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.9e-34 150.6 82 80.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.2e-33 147.9 79 82.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 8.8e-32 141.7 76 85.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.0e-29 132.1 74 77.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 8.5e-27 125.2 66 83.3
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.3e-24 117.1 56 87.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 2.3e-24 117.1 242 33.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-23 114.0 63 82.5
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.4e-23 112.1 106 55.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 7.4e-23 112.1 82 64.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.2e-19 100.5 92 55.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.9e-18 97.4 53 79.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 8.0e-17 92.0 60 68.3
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-15 87.4 137 38.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.8e-14 83.6 48 72.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.4e-13 80.5 59 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 3.8e-11 73.2 102 40.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.4e-07 60.1 44 59.1
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 7.5e-07 58.9 74 43.2


User provided reference genes

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