Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.5e-62 242.7 118 100.0
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.4e-51 204.9 118 85.6
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.3e-31 139.8 115 63.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 9.3e-25 117.1 122 56.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.0e-23 113.6 105 54.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.5e-22 109.0 111 55.9
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 7.3e-22 107.5 114 48.2
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 9.6e-22 107.1 123 54.5
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 9.6e-22 107.1 117 53.0
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 9.6e-22 107.1 107 56.1
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 4.8e-21 104.8 126 53.2
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 8.1e-21 104.0 123 52.8
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.1e-20 103.6 106 55.7
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.4e-20 103.2 118 51.7
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.8e-20 102.8 126 51.6
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 3.4e-19 98.6 127 45.7
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.7e-18 96.3 116 50.0
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.9e-18 95.5 113 48.7
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.9e-18 95.5 113 48.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 3.8e-18 95.1 127 48.8
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.1e-17 93.6 110 48.2
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 1.4e-17 93.2 109 50.5
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.4e-17 93.2 113 48.7
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 7.1e-17 90.9 110 49.1
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.6e-16 89.7 104 50.0
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.6e-16 89.7 109 47.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.7e-16 89.0 106 47.2
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 3.5e-16 88.6 120 42.5
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 7.9e-16 87.4 109 48.6
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.0e-15 87.0 110 50.0
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-15 86.7 109 50.5
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.8e-15 86.3 126 43.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.8e-15 86.3 126 43.7
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.8e-15 86.3 117 48.7
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.0e-15 85.5 120 50.0
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 3.9e-15 85.1 109 48.6
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 5.1e-15 84.7 111 49.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 5.1e-15 84.7 109 51.4
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 6.7e-15 84.3 79 51.9
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 6.7e-15 84.3 118 43.2
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 1.1e-14 83.6 106 46.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 1.5e-14 83.2 113 43.4
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.5e-14 82.4 124 43.5
Gohir.A08G156500 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.3e-14 82.0 110 43.6
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.3e-14 82.0 117 48.7
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.3e-14 82.0 117 48.7
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 4.3e-14 81.6 116 45.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.3e-14 81.6 126 41.3
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 5.6e-14 81.3 112 43.8
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 7.4e-14 80.9 114 47.4
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 7.4e-14 80.9 109 42.2
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 9.6e-14 80.5 111 49.5
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 9.6e-14 80.5 117 44.4
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 9.6e-14 80.5 109 49.5
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 1.6e-13 79.7 112 51.8
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 2.1e-13 79.3 112 41.1
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 2.1e-13 79.3 110 41.8
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.7e-13 78.6 83 55.4
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 3.7e-13 78.6 109 45.9
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.8e-13 78.2 110 41.8
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 4.8e-13 78.2 115 43.5
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 4.8e-13 78.2 105 46.7
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 4.8e-13 78.2 119 47.9
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 8.1e-13 77.4 83 54.2
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 8.1e-13 77.4 83 54.2
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 8.1e-13 77.4 110 41.8
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.1e-12 77.0 110 40.9
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.8e-12 76.3 75 56.0
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 1.8e-12 76.3 110 40.9
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 2.4e-12 75.9 114 48.2
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.1e-12 75.5 107 50.5
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 4.0e-12 75.1 108 43.5
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.9e-12 74.3 132 37.9
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.5e-11 73.2 113 38.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.5e-11 73.2 113 38.1
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.5e-11 73.2 117 40.2
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 1.5e-11 73.2 110 43.6
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 2.0e-11 72.8 132 37.9
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 4.5e-11 71.6 120 39.2
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 5.8e-11 71.2 113 37.2
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 5.8e-11 71.2 113 37.2
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 7.6e-11 70.9 112 42.9
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 7.6e-11 70.9 136 39.0
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-10 70.1 113 43.4
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.3e-10 70.1 113 37.2
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.3e-10 70.1 113 37.2
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 116 40.5
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.3e-10 70.1 117 41.0
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 2.2e-10 69.3 115 38.3
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 2.2e-10 69.3 110 40.0
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.9e-10 68.9 120 42.5
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 2.9e-10 68.9 114 36.0
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 2.9e-10 68.9 114 37.7
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 3.8e-10 68.6 114 37.7
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 3.8e-10 68.6 114 36.0
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 3.8e-10 68.6 105 48.6
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 4.9e-10 68.2 128 41.4
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 4.9e-10 68.2 110 42.7
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 4.9e-10 68.2 113 44.2
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 8.4e-10 67.4 113 42.5
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 8.4e-10 67.4 104 45.2
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.4e-09 66.6 105 41.0
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.9e-09 66.2 124 41.1
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 1.9e-09 66.2 110 40.9
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 2.4e-09 65.9 132 34.1
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 2.4e-09 65.9 114 35.1
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 2.4e-09 65.9 105 41.0
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 4.2e-09 65.1 114 36.0
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 4.2e-09 65.1 114 36.0
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 4.2e-09 65.1 109 39.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 5.5e-09 64.7 110 36.4
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 7.1e-09 64.3 129 39.5
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 7.1e-09 64.3 124 38.7
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 7.1e-09 64.3 111 36.0
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 7.1e-09 64.3 129 39.5
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 7.1e-09 64.3 111 36.0
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 7.1e-09 64.3 129 39.5
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 7.1e-09 64.3 124 38.7
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 7.1e-09 64.3 111 36.0
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 7.1e-09 64.3 125 40.0
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 1.2e-08 63.5 126 38.1
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-08 63.5 121 38.0
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.2e-08 63.5 121 38.0
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.2e-08 63.5 124 39.5
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 1.6e-08 63.2 114 35.1
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.1e-08 62.8 122 36.1
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 2.1e-08 62.8 115 39.1
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 2.1e-08 62.8 116 37.9
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.1e-08 62.8 116 38.8
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 2.1e-08 62.8 106 43.4
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 3.9e-07 58.5 129 36.4
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 5.1e-07 58.2 102 39.2
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 5.1e-07 58.2 102 39.2
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 8.7e-07 57.4 127 39.4
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 8.7e-07 57.4 117 37.6
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 8.7e-07 57.4 117 37.6
DCAR_005630 Daucus carota HOM05D006292 ORTHO05D006110 1.5e-06 56.6 61 52.5
SGA_v2.0_scaffold198G41102 Striga asiatica HOM05D006292 ORTHO05D006110 4.3e-06 55.1 120 34.2
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 5.6e-06 54.7 49 63.3


User provided reference genes

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