Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.0e-283 978.4 473 100.0
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.5e-232 808.1 475 84.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.2e-201 705.3 469 74.0
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.2e-201 704.9 469 73.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.8e-199 699.5 485 71.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.8e-199 699.5 471 73.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.5e-198 696.4 485 72.0
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.5e-198 696.4 494 71.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 9.6e-198 693.7 495 71.1
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-197 693.0 485 72.8
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 4.8e-197 691.4 483 73.1
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 8.1e-197 690.6 474 72.2
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.4e-196 689.1 477 73.6
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 2.6e-195 685.6 488 70.7
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.2e-194 682.6 476 71.4
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 4.9e-194 681.4 471 72.6
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 6.4e-194 681.0 488 70.5
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 6.4e-194 681.0 483 72.7
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.9e-193 679.5 456 73.0
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.2e-193 678.3 480 71.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 4.2e-193 678.3 475 71.6
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.6e-192 676.4 479 71.4
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 2.1e-192 676.0 474 70.7
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.6e-192 674.9 474 71.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.0e-191 673.7 459 71.0
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.0e-191 673.7 484 71.3
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 6.7e-191 671.0 484 70.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 8.7e-191 670.6 486 69.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.5e-190 669.1 501 68.1
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.3e-190 668.3 465 70.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.3e-189 666.8 484 69.2
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.3e-189 666.8 483 70.6
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 5.3e-188 661.4 465 70.3
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.3e-188 661.4 479 68.7
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 9.0e-188 660.6 484 69.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.0e-187 659.4 472 71.0
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 2.6e-187 659.1 477 69.8
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.5e-187 658.3 470 69.4
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.0e-186 657.1 481 69.2
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.0e-186 657.1 470 69.6
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.0e-186 657.1 470 69.6
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.0e-186 657.1 473 70.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.9e-186 655.6 466 69.3
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.5e-185 652.5 467 71.3
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 4.2e-185 651.7 458 68.8
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 7.1e-185 651.0 491 67.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.2e-184 650.2 465 69.7
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.2e-184 650.2 480 68.8
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.1e-184 649.4 472 68.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 3.9e-183 645.2 459 70.6
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.5e-182 643.3 459 70.6
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 4.3e-182 641.7 471 69.0
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 5.3e-180 634.8 476 67.4
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 9.0e-180 634.0 527 62.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.2e-179 633.6 473 67.4
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.5e-179 633.3 480 67.3
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.0e-179 632.9 449 71.9
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.0e-178 630.6 519 64.4
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.4e-177 626.7 467 67.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.5e-177 625.9 436 72.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 5.1e-175 618.2 481 65.5
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.3e-174 615.5 492 62.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-173 613.6 465 67.5
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.8e-173 612.5 465 66.0
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 2.8e-173 612.5 462 67.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 4.8e-173 611.7 472 65.9
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.4e-172 609.4 485 64.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 3.8e-170 602.1 468 65.6
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 5.5e-169 598.2 462 68.2
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.2e-168 597.0 483 64.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.4e-166 588.6 473 63.0
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 5.7e-166 588.2 485 62.5
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.4e-164 582.8 463 64.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-164 582.8 465 65.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.5e-163 580.1 471 63.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.4e-161 573.5 460 64.3
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.5e-161 572.8 476 62.8
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 7.2e-161 571.2 467 63.8
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.7e-160 569.3 487 61.2
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 6.1e-160 568.2 463 61.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.0e-155 553.1 458 62.7
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.3e-154 550.4 457 61.9
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.3e-154 550.4 469 62.0
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.7e-154 550.1 496 59.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.6e-152 543.5 396 68.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.1e-152 543.1 488 58.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.4e-151 540.4 400 67.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 5.2e-151 538.5 456 61.8
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 2.6e-150 536.2 480 60.0
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 4.4e-150 535.4 554 53.2
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 6.5e-146 521.5 463 57.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 2.1e-144 516.5 369 70.7
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.0e-143 512.7 520 55.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.1e-140 504.2 367 69.5
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.4e-140 503.1 445 61.6
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 7.0e-140 501.5 461 57.0
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.3e-138 496.5 465 59.1
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.5e-137 493.0 386 66.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.6e-136 490.3 272 82.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.8e-135 486.9 505 50.7
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.1e-132 475.7 462 54.1
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-131 473.8 491 56.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.8e-128 463.0 844 37.0
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.8e-124 450.3 539 47.5
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 6.0e-123 445.3 413 57.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 7.8e-123 444.9 262 79.8
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 6.6e-122 441.8 512 48.6
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.3e-121 438.3 440 54.8
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.3e-113 411.8 327 64.8
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.7e-109 400.6 461 49.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.9e-103 378.3 382 57.3
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 9.9e-102 374.8 470 47.9
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-98 364.0 594 38.9
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.9e-97 360.5 431 51.5
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 6.6e-90 335.5 226 68.1
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 9.6e-89 331.6 325 54.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.8e-79 300.8 469 38.6
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.8e-77 293.1 194 70.1
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.9e-76 290.8 451 37.5
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 6.3e-64 249.2 281 45.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 3.8e-61 240.0 131 84.7
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.4e-58 231.5 125 84.8
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.7e-56 224.6 320 40.6
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.5e-53 212.6 386 39.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.7e-51 206.5 293 38.6
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.8e-50 204.5 113 82.3
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.8e-47 194.5 109 83.5
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.2e-34 149.8 86 82.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.8e-24 117.5 76 75.0
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 5.9e-22 109.8 59 81.4
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.5e-20 103.2 81 60.5
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 9.8e-17 92.4 71 59.2
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.7e-16 91.7 53 84.9
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 2.3e-13 81.3 41 85.4
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 3.9e-13 80.5 68 58.8
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 6.8e-10 69.7 94 44.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.5e-09 68.6 49 67.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 7.5e-09 66.2 45 71.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 9.8e-09 65.9 72 51.4


User provided reference genes

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