Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 7.7e-76 287.3 175 100.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 6.1e-57 224.6 175 77.7
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 6.1e-57 224.6 165 79.4
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.0e-57 224.2 177 76.3
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.0e-56 222.2 175 82.3
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.5e-55 219.9 177 76.3
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.6e-55 219.2 172 78.5
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.6e-55 219.2 165 79.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.7e-54 215.3 172 77.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.8e-54 214.9 175 74.9
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-53 213.8 165 78.8
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 4.1e-53 211.8 169 65.1
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.2e-52 210.3 165 77.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.5e-50 203.4 163 76.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.2e-50 201.8 175 74.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 4.2e-50 201.8 240 47.5
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.2e-50 201.1 169 74.6
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 4.0e-48 195.3 165 74.5
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.2e-48 194.9 182 73.6
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.0e-47 193.0 160 73.8
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.4e-47 192.2 177 74.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 3.4e-47 192.2 166 72.3
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 7.5e-47 191.0 164 72.0
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 7.5e-47 191.0 174 66.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 7.5e-47 191.0 166 77.1
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.5e-47 191.0 162 77.2
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 7.5e-47 191.0 165 73.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 9.8e-47 190.7 167 76.0
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 9.8e-47 190.7 167 76.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.8e-47 190.7 167 76.0
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.7e-46 189.9 166 68.1
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.7e-46 189.9 177 73.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.7e-46 188.7 176 73.9
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.7e-46 188.7 162 75.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 6.3e-46 188.0 175 56.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.3e-46 188.0 175 56.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.3e-46 188.0 175 56.0
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 6.3e-46 188.0 167 71.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.3e-46 188.0 177 67.8
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.4e-45 186.8 175 70.3
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.8e-45 186.4 166 71.7
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.4e-45 186.0 177 72.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.4e-45 184.9 175 55.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 7.0e-45 184.5 158 68.4
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.6e-44 183.3 175 67.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.7e-44 182.6 175 66.9
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 5.9e-44 181.4 164 67.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 7.7e-44 181.0 175 66.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.3e-43 180.3 177 65.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-43 179.9 173 58.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 175 68.6
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.8e-43 178.7 171 55.6
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.8e-43 178.7 173 57.8
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 5.0e-43 178.3 165 55.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 8.6e-43 177.6 164 57.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-42 177.2 175 53.7
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.5e-42 176.8 155 71.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.3e-42 175.6 175 56.6
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 4.2e-42 175.3 176 64.8
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.2e-42 174.5 167 58.1
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.2e-42 174.5 175 66.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 9.5e-42 174.1 158 71.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.2e-41 173.7 168 70.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.1e-41 172.9 175 67.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.1e-41 172.9 175 67.4
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 4.7e-41 171.8 165 55.8
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.0e-40 170.6 176 65.9
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.0e-40 170.6 175 66.9
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.4e-40 170.2 175 52.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.4e-40 170.2 176 63.6
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 176 63.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.3e-40 169.5 176 63.6
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.2e-39 167.2 175 60.6
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.2e-39 167.2 155 68.4
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 2.0e-39 166.4 167 56.9
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.4e-39 165.6 175 50.9
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 7.5e-39 164.5 166 66.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 7.5e-39 164.5 166 66.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.5e-39 164.5 176 65.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 9.8e-39 164.1 175 63.4
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.9e-38 162.5 175 50.9
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 3.7e-38 162.2 166 67.5
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.4e-37 160.2 166 65.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.8e-37 159.8 160 54.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 3.2e-37 159.1 159 64.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 7.0e-37 157.9 162 61.1
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.2e-36 157.1 175 49.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.0e-36 156.4 175 61.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 165 61.8
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 167 64.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 167 64.1
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 3.5e-36 155.6 169 63.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 5.9e-36 154.8 165 66.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.0e-35 154.1 158 62.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.0e-35 154.1 173 59.5
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.7e-35 153.3 163 63.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 175 54.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.3e-35 152.9 173 59.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.9e-35 152.5 165 61.8
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 176 57.4
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 146 66.4
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 6.6e-35 151.4 175 60.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 8.6e-35 151.0 166 62.0
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.6e-35 151.0 143 66.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 8.6e-35 151.0 165 47.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.5e-34 150.2 166 60.2
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 63.4
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.5e-34 149.4 164 61.6
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.3e-34 148.7 166 60.2
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 177 60.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 4.3e-34 148.7 163 49.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 5.6e-34 148.3 176 64.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 5.6e-34 148.3 158 58.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 7.3e-34 147.9 166 59.6
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 7.3e-34 147.9 175 59.4
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 9.5e-34 147.5 146 65.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.2e-33 147.1 165 60.0
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.2e-33 147.1 176 63.6
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.6e-33 146.7 159 61.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 176 61.9
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 155 63.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 155 63.9
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 8.0e-33 144.4 176 59.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 163 49.1
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.8e-32 143.3 163 54.6
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.1e-32 142.5 178 61.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 5.2e-32 141.7 178 61.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 5.2e-32 141.7 178 61.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 6.8e-32 141.4 178 61.2
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.0e-31 139.8 177 58.2
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.3e-30 137.1 179 60.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.2e-30 136.3 76 81.6
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 4.9e-30 135.2 163 61.3
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 6.4e-30 134.8 164 43.9
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.3e-26 122.5 158 57.6
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.3e-26 121.3 155 60.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.8e-25 119.4 70 74.3
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.8e-24 114.8 142 59.9
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.0e-23 113.2 117 46.2
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.8e-23 111.7 115 68.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.7e-22 110.2 129 46.5
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.5e-20 102.4 66 66.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.7e-19 100.1 129 44.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 3.0e-19 99.4 68 73.5
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.9e-19 99.0 364 27.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.9e-18 96.7 69 72.5
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.0e-16 89.0 65 61.5
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 8.9e-16 87.8 152 36.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.3e-14 84.0 121 38.0
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.1e-13 80.9 111 36.9


User provided reference genes

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