Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.5e-277 957.6 462 100.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.4e-233 812.0 475 84.0
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.3e-180 636.0 474 68.6
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.0e-180 635.2 477 67.9
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.5e-179 633.3 489 68.1
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.6e-179 632.5 476 65.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.8e-178 628.2 478 68.0
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.4e-177 625.9 493 64.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.1e-177 625.2 496 65.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.5e-176 622.1 491 64.0
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 7.7e-176 620.9 495 63.6
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 7.7e-176 620.9 486 67.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.8e-175 618.6 471 66.5
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.9e-174 616.3 474 66.2
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.5e-174 615.9 474 65.6
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 2.5e-174 615.9 479 65.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.5e-174 615.9 481 65.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 4.2e-174 615.1 481 66.3
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 9.4e-174 614.0 485 66.2
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.6e-173 613.2 473 65.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.1e-173 612.8 475 65.5
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 3.6e-173 612.1 476 64.9
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 6.1e-173 611.3 479 64.1
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 6.8e-172 607.8 484 65.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.2e-171 607.1 460 64.3
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.2e-171 607.1 479 64.5
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.6e-171 605.9 476 65.1
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.4e-171 605.5 467 64.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 5.7e-171 604.7 474 64.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 9.8e-171 604.0 476 64.3
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.7e-170 603.2 479 64.3
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.7e-170 602.1 486 64.6
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.3e-170 601.3 503 63.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.1e-169 600.5 473 64.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 4.1e-169 598.6 468 64.5
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 4.1e-169 598.6 468 64.5
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 5.4e-169 598.2 475 63.8
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.6e-168 596.7 468 63.9
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.0e-168 596.3 463 63.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.5e-168 595.1 467 64.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 5.9e-168 594.7 451 65.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.0e-167 594.0 468 66.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.3e-167 593.6 459 63.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.7e-167 593.2 463 63.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 5.0e-167 591.7 466 63.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 8.6e-167 590.9 465 63.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 2.1e-165 586.3 479 63.9
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.8e-165 585.9 469 64.6
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.6e-165 585.5 471 64.1
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.3e-164 582.8 486 62.8
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.2e-164 581.6 472 64.4
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.2e-164 581.6 479 63.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 4.4e-163 578.6 519 59.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.7e-162 576.6 472 63.3
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.7e-162 576.6 463 63.3
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 6.4e-162 574.7 463 63.3
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 7.0e-161 571.2 525 57.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.9e-159 565.5 465 63.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.9e-158 563.1 457 63.7
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.9e-158 563.1 469 61.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 5.6e-158 561.6 465 61.5
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.3e-156 556.2 467 61.5
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 5.2e-156 555.1 487 59.1
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 5.2e-156 555.1 480 60.2
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.7e-154 550.1 442 65.2
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.2e-154 549.7 477 60.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.9e-153 546.6 459 61.4
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.0e-151 540.8 445 61.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.7e-151 540.0 451 61.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 3.0e-151 539.3 467 59.5
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.5e-150 537.0 458 62.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 4.3e-150 535.4 464 59.5
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.2e-149 533.9 482 56.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 8.1e-149 531.2 465 60.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.1e-148 530.8 485 59.0
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.4e-147 525.8 468 58.3
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 7.1e-145 518.1 462 58.4
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.7e-144 516.2 490 56.1
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.6e-144 515.4 464 58.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.6e-141 506.9 459 57.1
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.1e-140 502.7 460 57.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 5.2e-140 501.9 477 57.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.7e-138 496.9 498 56.8
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 8.4e-138 494.6 500 52.8
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 4.1e-137 492.3 454 55.7
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 4.1e-137 492.3 493 54.4
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 5.4e-137 491.9 555 49.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.3e-135 487.3 391 62.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 6.6e-135 485.0 401 62.3
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 7.3e-134 481.5 454 57.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 4.0e-132 475.7 472 54.9
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.9e-130 468.8 519 51.3
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 6.0e-128 461.8 384 63.8
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 5.1e-127 458.8 368 63.6
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.6e-126 454.5 460 56.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-124 451.1 272 77.6
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.0e-124 449.1 450 52.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.2e-123 447.6 374 62.3
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.9e-122 443.0 514 47.7
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.2e-120 437.6 463 52.5
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.5e-120 436.0 435 56.1
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.3e-118 429.1 488 52.7
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.1e-117 424.9 508 47.0
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.4e-116 424.1 539 44.0
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.9e-112 408.3 435 53.1
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 3.0e-111 406.4 262 73.3
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 6.9e-108 395.2 407 53.1
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 9.3e-105 384.8 844 33.1
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.6e-101 374.0 323 59.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-100 370.2 456 46.9
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.1e-92 344.7 378 53.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-89 334.3 594 37.2
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 4.2e-89 332.8 462 44.6
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.7e-85 319.7 429 47.8
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 8.5e-82 308.5 226 62.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.4e-79 301.2 315 51.4
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.6e-75 287.0 468 37.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 5.9e-75 285.8 454 37.4
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.6e-72 277.7 173 72.3
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.8e-58 229.9 452 31.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 3.6e-56 223.4 130 81.5
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 3.4e-54 216.9 125 82.4
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.7e-53 214.5 287 41.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.3e-49 200.3 293 38.9
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 4.4e-46 189.9 113 75.2
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-45 188.3 391 36.6
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 8.6e-42 175.6 109 74.3
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.7e-27 127.5 85 71.8
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 4.9e-21 106.7 61 77.0
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 1.1e-20 105.5 66 78.8
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 7.8e-19 99.4 81 58.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 2.1e-16 91.3 71 56.3
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.3e-13 82.0 55 78.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 4.9e-13 80.1 69 53.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 7.1e-12 76.3 41 78.0
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 4.6e-11 73.6 91 47.3
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.9e-10 70.5 49 67.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 1.9e-09 68.2 45 71.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 9.6e-09 65.9 42 73.8


User provided reference genes

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