Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 5.9e-97 357.5 172 100.0
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.1e-26 124.0 150 43.3
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.5e-26 122.9 140 44.3
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.5e-26 122.9 138 48.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 4.2e-26 122.1 149 44.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.6e-25 120.2 153 43.8
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 7.9e-25 117.9 129 45.7
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.3e-24 116.3 172 38.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.3e-24 116.3 136 45.6
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.1e-24 115.2 150 44.0
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 6.7e-24 114.8 142 40.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.5e-23 113.6 160 38.1
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 3.3e-23 112.5 151 39.7
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 4.3e-23 112.1 156 39.1
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 4.3e-23 112.1 156 39.1
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 5.7e-23 111.7 140 40.0
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.2e-22 109.8 144 39.6
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.7e-22 109.0 141 39.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 4.8e-22 108.6 154 38.3
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 4.8e-22 108.6 141 41.1
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.1e-21 107.5 165 35.8
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.4e-21 106.3 136 39.7
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.1e-21 105.9 171 33.3
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 4.1e-21 105.5 160 37.5
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.1e-21 105.5 115 43.5
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.9e-21 104.8 152 38.2
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 6.9e-21 104.8 147 39.5
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 6.9e-21 104.8 211 32.7
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 9.1e-21 104.4 185 36.8
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 1.2e-20 104.0 153 37.3
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.5e-20 103.6 162 38.3
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.5e-20 103.6 119 43.7
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.5e-20 103.6 153 35.3
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.4e-20 102.4 150 36.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.4e-20 102.4 150 36.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 4.5e-20 102.1 169 39.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 4.5e-20 102.1 150 36.7
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 5.9e-20 101.7 155 38.7
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 5.9e-20 101.7 141 41.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 7.7e-20 101.3 151 35.8
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.0e-19 100.9 210 33.8
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.0e-19 100.9 171 33.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.0e-19 100.9 166 34.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.3e-19 100.5 149 35.6
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-19 100.1 125 44.0
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-19 100.1 132 42.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.2e-19 99.8 148 35.8
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 2.2e-19 99.8 172 36.0
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.9e-19 99.4 149 36.2
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 5.0e-19 98.6 172 35.5
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.0e-19 98.6 144 38.2
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 6.5e-19 98.2 179 31.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.5e-19 97.8 135 38.5
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 8.5e-19 97.8 145 36.6
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.1e-18 97.4 146 34.2
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.1e-18 97.4 129 39.5
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.4e-18 97.1 152 32.9
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.9e-18 96.7 138 37.7
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.5e-18 96.3 144 35.4
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-18 95.9 197 34.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.2e-18 95.5 163 34.4
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 4.2e-18 95.5 145 40.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 4.2e-18 95.5 164 35.4
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 9.4e-18 94.4 148 39.2
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 9.4e-18 94.4 156 35.3
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.2e-17 94.0 144 35.4
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.6e-17 93.6 154 35.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.1e-17 93.2 154 35.7
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.1e-17 93.2 145 35.2
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 2.7e-17 92.8 177 33.9
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.7e-17 92.0 172 36.0
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 4.7e-17 92.0 138 35.5
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.7e-17 92.0 109 38.5
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 4.7e-17 92.0 143 36.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 6.1e-17 91.7 160 35.0
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 6.1e-17 91.7 122 36.1
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 7.9e-17 91.3 143 35.0
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.4e-16 90.5 149 35.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.8e-16 90.1 160 35.0
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.8e-16 90.1 148 35.1
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.8e-16 90.1 63 54.0
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.0e-16 89.4 171 32.7
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 5.1e-16 88.6 156 34.6
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 8.8e-16 87.8 186 31.7
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 8.8e-16 87.8 146 34.2
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.5e-15 87.0 170 29.4
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-15 87.0 149 36.9
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.6e-15 86.3 187 32.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.3e-15 85.9 127 37.0
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.3e-15 85.9 59 54.2
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.3e-15 85.9 140 35.0
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.4e-15 85.5 172 32.6
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.4e-15 84.7 140 33.6
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 7.4e-15 84.7 187 30.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 9.7e-15 84.3 139 36.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.7e-15 84.3 140 33.6
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 9.7e-15 84.3 140 33.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.3e-14 84.0 51 68.6
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.7e-14 83.6 140 34.3
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 3.7e-14 82.4 58 58.6
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 4.8e-14 82.0 118 37.3
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 6.3e-14 81.6 166 30.7
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.1e-13 80.9 158 31.6
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.4e-13 80.5 132 31.1
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.4e-13 80.5 52 57.7
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.8e-13 80.1 154 31.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 5.3e-13 78.6 55 56.4
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 9.1e-13 77.8 142 32.4
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.5e-12 77.0 136 31.6
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.5e-12 77.0 136 31.6
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.0e-12 76.6 61 54.1
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.6e-12 76.3 172 31.4
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-12 75.9 50 60.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-12 75.9 50 60.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 3.4e-12 75.9 50 60.0
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 4.5e-12 75.5 108 39.8
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 7.7e-12 74.7 59 47.5
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.7e-12 74.7 166 31.3
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.0e-11 74.3 48 54.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 56.0
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.3e-11 73.9 50 56.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 56.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 56.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 56.0
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.3e-11 73.9 50 56.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 58.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-11 73.9 173 31.2
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.3e-11 73.9 48 54.2
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.7e-11 73.6 50 56.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.7e-11 73.6 50 56.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.7e-11 73.6 50 56.0
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.7e-11 73.6 154 31.8
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.2e-11 73.2 50 56.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.2e-11 73.2 50 56.0
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.2e-11 73.2 48 52.1
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-11 72.8 169 32.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.0e-11 72.0 59 45.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.0e-11 72.0 59 45.8
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.0e-11 72.0 178 29.8
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.9e-10 70.1 127 32.3
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.5e-10 69.7 124 32.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 4.2e-10 68.9 49 55.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 7.2e-10 68.2 53 50.9
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 7.2e-10 68.2 49 53.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.6e-09 67.0 49 53.1
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.6e-09 65.9 141 31.2
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 6.1e-09 65.1 49 53.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 8.0e-09 64.7 50 42.0
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 8.0e-09 64.7 50 42.0
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.0e-08 64.3 44 52.3
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.8e-08 63.5 65 41.5
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.8e-08 63.5 49 49.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 5.2e-08 62.0 47 51.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.5e-07 60.5 49 46.9


User provided reference genes

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