Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1950.3 1048 100.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1445.6 1137 69.2
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1433.3 1122 68.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1424.5 1129 69.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1423.3 1127 68.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1133 69.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1409.4 1127 68.1
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1404.4 1133 69.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1399.4 1131 69.3
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1390.2 1133 65.9
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1121 67.6
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1114 69.0
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1379.4 1121 66.3
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1377.1 1121 67.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1370.1 1125 68.4
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1365.5 1016 71.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1363.2 1126 67.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1360.1 1133 66.8
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1131 65.9
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1350.1 1117 65.4
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1133 66.3
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1136 66.9
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1332.0 1114 65.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1132 65.5
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1326.6 1123 64.6
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1325.8 1205 63.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1321.6 1118 65.7
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1314.3 1122 62.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1312.4 1138 63.4
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1111 62.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1303.9 1006 69.1
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1295.4 1128 62.7
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1285.0 1121 63.8
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1244 60.0
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1278.8 1128 63.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1122 60.9
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1115 63.1
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1269.6 1121 61.6
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1123 62.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1261.9 1124 62.9
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1119 61.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1259.6 1123 63.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1258.8 1171 59.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1257.7 1122 63.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1254.6 1107 63.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1253.8 1123 62.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1240.3 1131 63.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1239.9 1105 61.5
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1237.6 1170 60.4
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1236.5 1121 60.3
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1234.6 1138 58.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1225.7 1120 59.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1223.8 1122 58.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1217.6 1051 61.4
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1213.0 1121 58.5
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1212.2 1128 61.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1211.8 1103 62.2
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1211.1 1132 59.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1210.7 1096 59.4
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1208.0 1138 57.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1207.6 1098 60.7
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1207.6 1125 59.8
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1206.4 1145 57.7
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1205.7 1039 60.4
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1205.7 881 75.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1205.3 1094 60.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1204.5 1108 59.6
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 1135 59.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1201.0 1111 58.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1197.6 1092 61.8
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1196.8 1136 58.9
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1194.5 1044 60.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1194.1 1125 58.8
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1193.3 1135 59.3
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1190.3 1093 58.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1190.3 1122 59.8
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1189.5 1133 59.0
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1186.4 1132 58.0
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1183.7 1110 60.8
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1181.8 1106 57.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1175.2 1061 58.3
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1174.8 1126 57.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1174.1 1070 58.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1173.3 1078 57.6
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1172.9 1075 57.8
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1170.2 1080 57.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1162.1 1090 57.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1157.1 1117 57.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1154.4 1129 57.0
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1149.0 1116 58.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1112.1 1086 56.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1094.7 918 64.9
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1088.6 1070 55.7
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1087.0 1055 55.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1085.5 1077 55.2
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1084.7 1097 53.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1084.3 1024 57.5
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1083.9 1035 56.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 1.6e-301 1039.6 1023 53.8
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 6.6e-300 1034.2 1116 53.8
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 3.1e-297 1025.4 1110 53.2
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 1.5e-296 1023.1 898 58.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.3e-292 1010.0 912 59.4
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.0e-276 957.2 1110 50.9
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.5e-275 953.4 1073 52.0
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 7.2e-270 934.5 816 63.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.0e-267 926.4 1046 51.5
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 7.2e-262 907.9 644 74.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.1e-257 892.5 772 61.5
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.1e-253 878.2 679 67.7
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 3.5e-248 862.4 1061 46.2
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.0e-228 797.7 1081 41.9
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.8e-228 797.0 965 44.4
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.8e-225 786.9 582 69.9
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.0e-215 752.3 1000 43.6
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-173 614.0 549 61.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-173 614.0 549 61.9
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 2.5e-166 590.5 874 40.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 8.6e-106 389.4 389 57.1
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 3.9e-98 364.0 400 52.0
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 9.9e-62 243.0 201 61.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.6e-54 218.4 211 55.9
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.9e-52 212.2 165 66.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.9e-51 206.8 222 51.4
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 5.7e-49 200.7 171 64.3
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 8.5e-45 186.8 430 30.7
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 3.3e-41 174.9 174 56.9
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.6e-40 172.6 176 55.1
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.7e-32 146.0 489 26.0
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.2e-27 129.8 120 58.3
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 7.7e-22 110.5 97 55.7
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 3.2e-20 105.1 399 25.8
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-19 102.4 107 50.5
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.8e-15 89.4 302 28.1
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 7.0e-15 87.4 97 52.6
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 2.2e-13 82.4 74 59.5
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 4.7e-11 74.7 68 55.9
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.2e-10 71.2 83 54.2
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.7e-08 66.2 115 40.0
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.7e-08 66.2 50 50.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 8.3e-08 63.9 79 48.1
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 4.1e-07 61.6 72 50.0
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 9.1e-07 60.5 113 38.1


User provided reference genes

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