Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 6.5e-48 193.7 98 100.0
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 4.2e-47 191.0 98 96.9
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.0e-37 159.8 99 81.8
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.4e-34 149.4 99 78.8
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 4.1e-34 147.9 100 75.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 4.1e-34 147.9 100 76.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 76.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 2.6e-33 145.2 100 75.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 7.7e-33 143.7 100 75.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 74.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 73.5
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 2.2e-32 142.1 100 75.0
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 75.3
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 6.5e-32 140.6 99 72.7
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 68.4
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 69.4
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 99 72.7
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.9e-31 139.0 99 71.7
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 71.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 71.4
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 4.2e-31 137.9 99 71.7
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 67.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 4.2e-31 137.9 100 72.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 5.5e-31 137.5 99 71.7
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.2e-31 137.1 100 71.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.2e-31 137.1 100 71.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 1.2e-30 136.3 99 71.7
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 70.7
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 70.7
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 70.7
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 69.7
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 70.7
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 70.7
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.1e-30 135.6 100 70.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.1e-30 135.6 100 70.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 70.7
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 70.7
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.7e-30 135.2 100 70.0
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 69.7
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 70.7
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 70.7
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 70.7
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 70.7
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 70.7
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 4.7e-30 134.4 98 67.3
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 6.1e-30 134.0 98 66.3
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 6.1e-30 134.0 99 69.7
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 6.1e-30 134.0 98 69.4
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 7.9e-30 133.7 99 69.7
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 7.9e-30 133.7 99 69.7
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 7.9e-30 133.7 98 67.3
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 1.0e-29 133.3 99 68.7
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.0e-29 133.3 99 69.7
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.0e-29 133.3 98 69.4
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 68.7
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 65.3
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 66.3
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 67.3
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 100 70.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 100 70.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.8e-29 132.5 99 66.7
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.8e-29 132.5 109 66.1
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 98 69.4
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.8e-29 132.5 101 70.3
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.8e-29 132.5 156 51.3
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.8e-29 132.5 98 68.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 69.7
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 69.7
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 66.7
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 71.7
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 68.4
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 3.9e-29 131.3 104 68.3
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 5.1e-29 131.0 99 67.7
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 5.1e-29 131.0 99 69.7
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 5.1e-29 131.0 100 70.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 6.7e-29 130.6 100 74.0
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 8.8e-29 130.2 99 66.7
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 8.8e-29 130.2 98 63.3
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 8.8e-29 130.2 99 68.7
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 73.0
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 73.0
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.0e-28 129.0 99 65.7
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-28 129.0 100 72.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-28 129.0 99 73.7
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 2.0e-28 129.0 99 68.7
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.3e-28 128.3 98 66.3
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 4.4e-28 127.9 104 66.3
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 5.7e-28 127.5 101 68.3
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 5.7e-28 127.5 98 66.3
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 5.7e-28 127.5 98 65.3
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 9.7e-28 126.7 100 71.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 9.7e-28 126.7 101 67.3
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.2e-27 125.6 102 68.6
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.2e-27 125.6 99 64.6
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.8e-27 125.2 99 66.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.7e-27 124.8 102 66.7
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 3.7e-27 124.8 100 67.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 6.3e-27 124.0 98 63.3
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 6.3e-27 124.0 98 66.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 2.4e-26 122.1 98 65.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.1e-26 121.7 100 67.0
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.1e-26 121.7 124 55.6
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 4.1e-26 121.3 98 59.2
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.1e-26 121.3 98 59.2
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 5.3e-26 120.9 98 61.2
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 9.1e-26 120.2 99 65.7
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 9.1e-26 120.2 98 65.3
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 9.1e-26 120.2 98 65.3
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 98 58.2
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-25 119.4 98 58.2
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-25 119.4 98 58.2
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 2.0e-25 119.0 99 66.7
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.0e-25 119.0 91 68.1
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.0e-25 119.0 123 56.1
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 3.5e-25 118.2 98 59.2
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 3.5e-25 118.2 100 63.0
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.5e-25 118.2 99 65.7
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.5e-25 118.2 99 65.7
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 4.5e-25 117.9 100 63.0
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 5.9e-25 117.5 99 62.6
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 5.9e-25 117.5 104 62.5
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.0e-24 116.7 99 62.6
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.0e-24 116.7 98 57.1
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 1.3e-24 116.3 99 61.6
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 1.3e-24 116.3 98 59.2
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.9e-24 115.2 90 65.6
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.9e-24 115.2 90 63.3
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 2.9e-24 115.2 107 59.8
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 5.0e-24 114.4 100 64.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 8.5e-24 113.6 96 59.4
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.1e-23 113.2 97 61.9
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.5e-23 112.1 96 63.5
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.2e-23 111.7 94 64.9
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.5e-23 110.9 102 63.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 9.4e-23 110.2 80 72.5
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.6e-22 109.4 96 59.4
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.7e-22 108.6 97 58.8
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 3.6e-22 108.2 61 77.0
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 1.0e-21 106.7 98 57.1
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.0e-21 106.7 75 70.7
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 3.0e-21 105.1 75 72.0
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.0e-21 104.8 99 56.6
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.2e-21 104.4 60 83.3
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 6.7e-21 104.0 63 77.8
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.1e-20 103.2 72 68.1
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.3e-20 101.7 78 62.8
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.7e-20 100.1 72 66.7
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.7e-20 100.1 72 66.7
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.7e-20 100.1 72 66.7
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 2.8e-19 98.6 96 53.1
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.6e-17 92.8 97 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 7.7e-09 63.9 92 38.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 2.5e-07 58.9 90 35.6
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 4.2e-07 58.2 59 47.5


User provided reference genes

Program Settings