Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.2e-161 573.2 290 100.0
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.5e-116 423.3 293 74.7
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.5e-116 423.3 293 74.7
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 6.2e-115 417.9 287 74.9
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 4.5e-113 411.8 301 73.4
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.0e-112 410.6 285 73.7
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 2.9e-112 409.1 281 74.4
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 8.4e-112 407.5 283 73.9
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.9e-111 406.4 278 76.6
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.9e-111 406.4 290 72.4
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 2.1e-110 402.9 301 70.4
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 7.9e-110 401.0 285 73.0
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 7.9e-110 401.0 263 76.8
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.0e-109 400.6 271 76.4
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.3e-109 400.2 292 71.2
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.3e-109 400.2 301 70.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.6e-107 393.3 274 74.8
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.7e-107 392.1 286 72.7
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.3e-107 391.3 263 76.8
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.4e-106 389.4 287 72.1
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 3.1e-106 389.0 274 72.6
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 4.1e-106 388.7 291 69.4
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 5.3e-106 388.3 279 72.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.2e-105 387.1 296 70.3
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.5e-105 386.7 271 74.5
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 5.9e-105 384.8 301 69.4
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 7.6e-105 384.4 295 69.5
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.2e-104 382.9 286 70.6
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 6.5e-104 381.3 291 68.7
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 8.5e-104 380.9 291 68.7
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.1e-103 380.6 294 68.4
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 5.5e-103 378.3 295 67.5
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 7.2e-103 377.9 268 70.9
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 7.2e-103 377.9 283 70.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 7.2e-103 377.9 272 72.4
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.2e-102 377.1 289 67.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.6e-102 376.7 296 66.9
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.7e-102 375.9 248 78.6
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.7e-102 375.9 252 76.2
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 3.6e-102 375.6 266 70.3
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.6e-102 375.6 278 71.2
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 4.6e-102 375.2 294 68.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 7.9e-102 374.4 295 68.1
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 2.3e-101 372.9 275 72.0
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 6.7e-101 371.3 288 68.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 2.5e-100 369.4 285 68.4
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.5e-100 369.4 264 73.1
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 5.7e-100 368.2 231 80.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 2.8e-99 365.9 284 67.3
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.1e-98 362.1 248 72.2
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 4.1e-98 362.1 248 72.2
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 6.9e-98 361.3 286 66.8
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 9.0e-98 360.9 264 70.5
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.5e-97 360.1 278 68.3
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 4.5e-97 358.6 283 67.8
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 5.9e-97 358.2 263 72.2
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.3e-96 357.1 253 70.0
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.2e-96 356.3 364 56.3
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 5.0e-96 355.1 288 63.9
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.9e-95 353.2 264 67.4
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.2e-95 352.1 253 69.6
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 5.5e-95 351.7 249 71.5
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 5.5e-95 351.7 312 60.9
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.6e-94 349.0 274 66.1
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 3.6e-94 349.0 249 70.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.6e-94 349.0 272 66.2
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 7.9e-94 347.8 274 65.3
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.8e-93 346.7 286 63.6
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 5.1e-93 345.1 250 70.4
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 5.1e-93 345.1 278 68.0
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 5.1e-93 345.1 230 74.3
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.5e-92 343.6 251 68.9
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.6e-92 342.8 253 69.2
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 5.7e-92 341.7 244 71.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 7.4e-92 341.3 253 69.2
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 7.4e-92 341.3 253 69.6
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 9.7e-92 340.9 253 69.2
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.7e-91 340.1 259 66.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 6.3e-91 338.2 277 64.6
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 6.9e-90 334.7 225 73.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 9.1e-90 334.3 291 61.5
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.0e-89 333.2 288 61.8
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 4.5e-89 332.0 301 60.5
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 5.9e-89 331.6 318 56.0
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.2e-87 325.9 290 60.7
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 3.2e-87 325.9 274 64.2
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 7.2e-87 324.7 259 65.3
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.6e-86 323.6 281 61.6
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 4.7e-86 322.0 262 64.9
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 6.1e-86 321.6 283 60.4
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 6.1e-86 321.6 258 64.7
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.9e-85 318.9 291 58.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 3.5e-81 305.8 232 66.4
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 6.5e-80 301.6 225 67.1
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 4.2e-79 298.9 407 45.2
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.8e-77 293.5 190 77.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.0e-77 292.7 231 65.8
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.1e-74 284.3 236 64.0
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.3e-74 282.0 194 74.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.5e-71 273.1 314 51.9
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 8.0e-70 268.1 273 52.0
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.3e-69 266.5 239 57.3
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 1.5e-68 263.8 268 50.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 7.5e-68 261.5 258 51.6
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 7.0e-66 255.0 252 56.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 4.5e-65 252.3 253 56.5
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 5.9e-65 251.9 190 66.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.9e-63 246.9 295 50.8
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.8e-59 233.0 199 63.3
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 3.1e-58 229.6 251 49.4
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 7.8e-57 224.9 277 43.7
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.5e-55 219.9 172 63.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.2e-54 217.6 144 77.1
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 3.0e-53 213.0 247 47.0
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.4e-52 209.5 189 59.3
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 3.0e-48 196.4 247 44.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.7e-43 180.6 249 41.0
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 6.4e-43 178.7 138 63.8
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 5.2e-37 159.1 123 63.4
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 7.5e-36 155.2 201 46.3
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 6.2e-30 135.6 163 50.3
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 7.6e-20 102.1 79 64.6
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.7e-17 93.6 77 61.0
CiPaw.15G063200 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.5e-07 61.2 68 54.4
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 2.8e-06 57.0 36 75.0
VMungo1309G1169 Vigna mungo HOM05D000561 ORTHO05D432855 6.2e-06 55.8 94 43.6


User provided reference genes

Program Settings