Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.2e-36 154.8 65 100.0
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.9e-35 151.8 65 95.4
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 6.6e-33 143.3 70 88.6
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.4e-30 135.6 65 84.6
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 1.8e-30 135.2 63 87.3
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 3.1e-30 134.4 65 84.6
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 3.1e-30 134.4 64 87.5
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 5.3e-30 133.7 67 82.1
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.2e-29 132.5 62 82.3
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 1.2e-29 132.5 65 83.1
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.2e-29 132.5 65 83.1
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.2e-29 132.5 65 81.5
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 1.5e-29 132.1 68 85.3
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.5e-29 132.1 65 84.6
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 2.6e-29 131.3 62 83.9
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 2.6e-29 131.3 70 78.6
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 2.6e-29 131.3 68 85.3
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 2.6e-29 131.3 63 84.1
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 2.6e-29 131.3 65 84.6
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 3.4e-29 131.0 61 83.6
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 3.4e-29 131.0 62 88.7
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 5.8e-29 130.2 67 83.6
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 5.8e-29 130.2 62 82.3
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 7.6e-29 129.8 65 81.5
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 7.6e-29 129.8 65 81.5
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 7.6e-29 129.8 65 84.6
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 1.3e-28 129.0 65 83.1
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.3e-28 129.0 62 80.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.7e-28 128.6 63 87.3
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.7e-28 128.6 65 83.1
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 2.2e-28 128.3 62 80.6
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 2.2e-28 128.3 62 85.5
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.9e-28 127.9 66 81.8
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-28 127.9 63 81.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-28 127.9 63 81.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-28 127.9 63 81.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-28 127.9 63 81.0
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 3.8e-28 127.5 70 75.7
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.9e-28 127.1 67 77.6
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 4.9e-28 127.1 63 84.1
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.4e-28 126.7 63 82.5
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.4e-28 126.7 63 82.5
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 6.4e-28 126.7 63 82.5
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 6.4e-28 126.7 63 82.5
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 8.4e-28 126.3 63 81.0
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.1e-27 125.9 63 81.0
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.4e-27 125.6 65 81.5
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 1.9e-27 125.2 63 82.5
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.9e-27 125.2 61 78.7
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 3.2e-27 124.4 66 78.8
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 3.2e-27 124.4 65 78.5
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 3.2e-27 124.4 64 79.7
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 4.2e-27 124.0 66 78.8
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 4.2e-27 124.0 65 78.5
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 4.2e-27 124.0 64 79.7
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.5e-27 123.6 63 81.0
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 5.5e-27 123.6 64 78.1
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 7.1e-27 123.2 65 76.9
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 9.3e-27 122.9 58 84.5
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 9.3e-27 122.9 63 81.0
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 9.3e-27 122.9 65 78.5
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 9.3e-27 122.9 64 78.1
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.6e-26 122.1 62 80.6
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 2.1e-26 121.7 59 83.1
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.1e-26 121.7 63 79.4
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 2.1e-26 121.7 59 83.1
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 3.5e-26 120.9 64 79.7
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 3.5e-26 120.9 65 81.5
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 7.9e-26 119.8 61 85.2
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.0e-25 119.4 65 76.9
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.0e-25 119.4 67 74.6
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.3e-25 119.0 63 81.0
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 78.0
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 79.7
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 2.3e-25 118.2 58 81.0
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.3e-25 118.2 67 77.6
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.9e-25 117.5 65 75.4
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.9e-25 117.5 65 75.4
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 8.7e-25 116.3 64 76.6
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.1e-24 115.9 59 78.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-24 114.4 65 73.8
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 9.6e-24 112.8 62 74.2
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.6e-23 112.1 71 67.6
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-23 112.1 61 75.4
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.6e-23 112.1 61 75.4
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.6e-23 112.1 61 75.4
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.1e-22 107.8 63 68.3
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 4.0e-22 107.5 50 84.0
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.3e-22 107.1 64 70.3
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.5e-21 105.5 49 85.7
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 2.6e-21 104.8 49 83.7
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.4e-21 104.4 50 82.0
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 3.4e-21 104.4 49 83.7
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 3.4e-21 104.4 49 79.6
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 4.5e-21 104.0 60 65.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 4.5e-21 104.0 52 80.8
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 8.4e-20 99.8 64 67.2
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.1e-19 99.4 62 69.4
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.4e-19 99.0 62 61.3
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.9e-19 98.6 51 84.3
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 2.5e-19 98.2 51 82.4
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 4.2e-19 97.4 61 63.9
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 7.1e-19 96.7 53 77.4
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.0e-17 92.8 46 78.3
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.3e-17 92.4 52 73.1
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.1e-16 89.4 64 64.1
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.5e-16 88.2 45 77.8
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 4.3e-16 87.4 52 76.9
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.3e-12 75.9 52 65.4
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 5.0e-12 73.9 53 67.9
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.9e-11 72.0 36 77.8
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.9e-11 72.0 36 77.8
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.2e-11 71.2 36 77.8
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 4.2e-11 70.9 36 77.8
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 9.3e-11 69.7 36 75.0
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.2e-10 69.3 36 75.0
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 3.5e-10 67.8 32 84.4
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.0e-09 66.2 38 73.7
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 3.0e-09 64.7 41 65.9
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.5e-08 62.4 31 74.2
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 1.9e-08 62.0 32 78.1
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.5e-08 61.6 35 71.4


User provided reference genes

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