Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.0e-105 386.7 191 100.0
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.0e-77 292.7 191 75.9
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 4.4e-77 291.6 187 72.7
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 9.9e-77 290.4 194 74.2
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.3e-76 290.0 193 73.1
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.2e-76 289.3 194 73.7
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 3.8e-76 288.5 194 72.7
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 6.4e-76 287.7 193 72.5
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.2e-74 283.5 195 69.7
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.1e-74 282.7 189 74.1
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.1e-74 282.7 191 70.7
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 3.5e-74 282.0 187 69.5
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 6.0e-74 281.2 187 69.5
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 7.8e-74 280.8 165 79.4
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 1.3e-73 280.0 190 70.0
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 2.3e-73 279.3 186 74.2
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 5.1e-73 278.1 191 69.6
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 6.6e-73 277.7 189 70.4
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 6.6e-73 277.7 192 70.8
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 4.3e-72 275.0 191 69.6
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.6e-71 273.1 188 66.0
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 2.1e-71 272.7 190 72.1
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.1e-70 270.4 185 69.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.1e-70 268.9 192 69.3
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 4.5e-69 265.0 194 67.0
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 4.5e-69 265.0 186 69.9
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 5.8e-69 264.6 188 68.1
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 7.6e-69 264.2 186 67.2
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 9.9e-69 263.8 191 67.0
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 3.8e-68 261.9 191 67.0
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.8e-68 261.9 183 71.6
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 3.8e-68 261.9 193 66.3
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 4.9e-68 261.5 183 66.7
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.1e-67 260.4 191 64.4
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.2e-67 258.8 167 71.3
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 4.2e-67 258.5 186 65.6
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 9.3e-67 257.3 186 68.8
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 9.3e-67 257.3 187 66.8
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.7e-66 255.8 191 66.5
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 6.0e-66 254.6 187 66.3
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.0e-66 254.6 186 66.1
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.0e-66 254.6 182 66.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 6.0e-66 254.6 186 66.1
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 7.9e-66 254.2 187 68.4
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 7.9e-66 254.2 186 65.1
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.0e-65 253.8 190 62.6
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.3e-65 253.4 192 64.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 1.8e-65 253.1 191 63.9
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.8e-65 253.1 188 65.4
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 3.9e-65 251.9 182 64.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.9e-65 251.9 161 71.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.7e-65 251.1 186 66.1
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 8.7e-65 250.8 186 64.0
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 8.7e-65 250.8 184 63.6
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 8.7e-65 250.8 184 63.6
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.1e-64 250.4 184 63.6
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.5e-64 250.0 184 64.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.5e-64 250.0 186 65.1
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.9e-64 249.6 190 66.3
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 2.5e-64 249.2 188 63.3
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 2.5e-64 249.2 186 64.5
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 5.6e-64 248.1 188 67.6
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.3e-63 246.9 182 65.9
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.1e-63 246.1 186 62.9
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.1e-63 246.1 187 63.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 6.2e-63 244.6 161 68.3
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 6.2e-63 244.6 191 63.4
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 6.2e-63 244.6 191 66.0
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 8.1e-63 244.2 186 64.0
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 8.1e-63 244.2 186 65.6
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.1e-62 243.8 184 63.0
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.4e-62 243.4 184 63.0
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.4e-62 243.4 191 63.4
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.8e-62 243.0 184 62.0
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.8e-62 243.0 184 62.5
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.4e-62 242.7 190 62.1
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 4.0e-62 241.9 187 62.6
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 4.0e-62 241.9 189 61.4
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 5.3e-62 241.5 156 70.5
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 6.9e-62 241.1 185 62.7
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 9.0e-62 240.7 184 62.0
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 9.0e-62 240.7 185 62.7
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.2e-61 240.4 182 65.4
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 1.5e-61 240.0 195 60.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.5e-61 240.0 191 58.6
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 2.0e-61 239.6 185 62.2
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 4.5e-61 238.4 184 62.5
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 5.8e-61 238.0 156 71.2
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 7.6e-61 237.7 185 61.6
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.9e-60 235.7 210 57.1
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 6.4e-60 234.6 184 61.4
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 8.4e-60 234.2 183 61.2
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.1e-59 233.8 184 61.4
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.1e-59 233.8 184 61.4
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.4e-59 233.4 185 59.5
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 5.5e-59 231.5 185 60.0
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.7e-58 229.2 184 58.2
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.6e-58 228.4 150 68.0
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 7.9e-58 227.6 150 66.7
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.9e-58 227.6 150 67.3
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.0e-57 227.3 189 58.2
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 8.7e-57 224.2 200 55.0
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 7.4e-56 221.1 191 58.6
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.8e-55 219.2 191 57.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.6e-50 203.4 151 60.9
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 3.5e-50 202.2 166 56.6
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.8e-47 192.6 186 54.3
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 3.7e-47 192.2 155 57.4
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 3.7e-47 192.2 167 55.1
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.4e-46 190.3 159 53.5
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 5.3e-46 188.3 157 63.1
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.2e-45 187.2 193 49.2
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 4.6e-42 175.3 117 70.9
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 3.0e-41 172.6 120 68.3
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-40 170.6 158 48.1
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-40 170.6 158 48.1
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 9.1e-38 161.0 120 63.3
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.1e-38 161.0 150 48.0
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.2e-36 156.4 101 72.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 7.2e-35 151.4 122 61.5
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 2.1e-34 149.8 109 66.1
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 4.5e-29 132.1 112 56.2
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 5.0e-28 128.6 70 82.9
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 6.1e-26 121.7 160 39.4
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 3.3e-24 115.9 74 73.0
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 2.4e-22 109.8 71 69.0
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.6e-21 106.3 85 57.6
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.5e-21 105.9 67 73.1
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.3e-20 104.0 145 37.2
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 5.5e-19 98.6 80 57.5
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-15 87.0 87 44.8
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 3.1e-14 82.8 64 60.9
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 5.9e-13 78.6 73 54.8
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.7e-12 77.0 151 29.8
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 2.7e-10 69.7 121 37.2


User provided reference genes

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