Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.0e-207 726.5 354 100.0
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 2.6e-139 499.2 375 64.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 7.6e-139 497.7 368 66.3
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.9e-138 495.7 363 66.9
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.9e-137 493.0 342 69.3
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 2.7e-136 489.2 363 66.9
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 1.1e-134 483.8 359 68.0
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.1e-132 477.2 341 67.7
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.1e-132 477.2 366 64.5
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.8e-132 476.5 361 66.2
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 4.0e-132 475.3 332 69.3
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 2.9e-130 469.2 346 67.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.9e-130 469.2 340 68.5
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 1.4e-129 466.8 343 67.6
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.4e-129 466.8 339 67.6
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 2.4e-129 466.1 344 65.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 5.4e-129 464.9 322 68.6
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 9.3e-129 464.2 322 68.3
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.6e-128 463.4 354 65.0
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.1e-128 463.0 328 66.8
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.1e-128 463.0 357 63.0
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 2.1e-128 463.0 336 67.3
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 3.5e-128 462.2 346 64.2
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 7.8e-128 461.1 346 64.2
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 7.8e-128 461.1 344 64.5
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 7.8e-128 461.1 357 63.3
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.0e-127 460.7 369 62.6
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.3e-127 459.5 346 63.9
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.9e-127 458.8 342 65.8
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 5.1e-127 458.4 344 66.0
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 6.6e-127 458.0 361 63.2
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.1e-126 457.2 346 67.9
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.9e-126 456.4 347 63.4
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.9e-126 456.4 329 68.1
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 4.3e-126 455.3 338 66.0
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.3e-126 454.5 354 65.3
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 9.6e-126 454.1 330 67.9
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 2.1e-125 453.0 345 64.9
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.4e-124 450.3 344 64.2
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 2.4e-124 449.5 368 62.2
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 3.1e-124 449.1 308 68.5
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.2e-123 447.2 329 67.5
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.5e-123 446.8 325 66.5
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 5.8e-123 444.9 315 69.5
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 9.9e-123 444.1 323 66.9
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 9.9e-123 444.1 319 65.5
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.7e-122 443.4 328 64.9
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 1.4e-121 440.3 326 65.0
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 3.2e-121 439.1 334 64.4
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 3.2e-121 439.1 365 60.3
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 4.2e-121 438.7 337 64.4
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.6e-120 436.8 362 62.7
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 2.1e-120 436.4 328 65.9
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.5e-120 435.6 294 69.0
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 4.6e-120 435.3 359 61.0
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 1.0e-119 434.1 332 63.6
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 8.7e-119 431.0 323 66.6
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 1.5e-118 430.3 329 64.4
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.9e-118 429.9 284 71.8
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 2.5e-118 429.5 345 62.3
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 3.3e-118 429.1 328 64.0
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 8.1e-117 424.5 323 64.1
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 8.1e-117 424.5 322 64.3
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.4e-116 423.7 345 60.9
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 1.4e-116 423.7 285 69.5
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.4e-116 422.9 311 66.2
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 4.0e-116 422.2 345 60.3
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 4.0e-116 422.2 331 61.9
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 4.0e-116 422.2 362 60.5
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.2e-115 420.6 362 61.0
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 5.8e-115 418.3 322 62.1
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 9.9e-115 417.5 322 62.1
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 9.9e-115 417.5 362 60.8
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 9.9e-115 417.5 343 61.2
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.7e-114 416.8 321 62.3
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.7e-114 416.8 324 62.3
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 2.2e-114 416.4 322 61.5
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.9e-114 416.0 336 61.3
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 3.8e-114 415.6 343 59.2
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.4e-113 413.7 339 60.2
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 2.4e-113 412.9 340 61.8
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 4.2e-113 412.1 324 62.7
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 5.5e-113 411.8 321 63.9
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 3.5e-112 409.1 316 63.3
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 3.0e-111 406.0 324 60.5
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 5.1e-111 405.2 327 60.2
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 2.1e-109 399.8 367 56.1
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.2e-107 394.0 321 58.9
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.4e-105 387.1 255 71.4
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.9e-105 386.7 365 56.2
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.8e-103 380.2 331 60.7
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 3.9e-103 379.0 323 60.4
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.9e-102 376.7 340 58.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 2.5e-102 376.3 258 69.8
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.0e-95 354.4 253 64.0
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.8e-95 353.6 349 54.4
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.1e-92 344.4 257 64.6
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 6.1e-88 328.6 323 51.4
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 4.5e-83 312.4 248 61.7
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.0e-82 311.2 290 52.4
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 3.6e-80 302.8 331 46.8
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.0e-78 297.0 331 51.1
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 5.7e-78 295.4 247 59.9
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.5e-73 280.8 217 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 5.5e-73 278.9 319 47.0
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 5.5e-73 278.9 455 37.4
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.4e-71 274.2 219 63.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 8.8e-71 271.6 288 51.7
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.0e-70 270.4 445 36.9
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.7e-69 267.3 284 51.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 5.2e-63 245.7 227 52.0
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 3.7e-61 239.6 192 63.5
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 5.5e-57 225.7 347 38.6
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.5e-54 217.6 156 66.0
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.6e-51 207.6 126 76.2
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.0e-50 204.9 154 68.2
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 2.3e-47 193.7 170 57.6
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.1e-47 193.4 129 70.5
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 5.4e-44 182.6 370 35.7
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 2.3e-42 177.2 127 62.2
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 3.3e-41 173.3 319 35.1
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 4.9e-37 159.5 368 31.8
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 6.4e-37 159.1 108 71.3
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 5.1e-34 149.4 122 54.1
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 8.3e-29 132.1 85 72.9
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 8.6e-26 122.1 77 67.5
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.9e-25 120.9 126 55.6
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-19 101.3 60 80.0
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.0e-18 98.6 71 67.6
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 3.5e-11 73.6 237 29.1
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.3e-08 65.1 119 35.3
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.6e-08 64.7 55 58.2
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 2.6e-06 57.4 106 34.0


User provided reference genes

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