Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1775.4 875 100.0
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1635.9 876 92.0
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1377.5 888 78.8
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1369.4 882 78.2
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1361.3 888 77.5
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1356.3 879 78.4
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1355.9 879 78.0
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1341.6 892 75.9
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1337.8 879 77.1
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1328.9 876 76.9
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1328.2 882 76.1
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1312.7 918 72.8
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1308.5 879 75.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1306.6 885 75.1
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1303.9 875 75.8
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1302.3 879 75.2
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1289.6 881 74.8
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1289.2 880 74.5
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1281.2 863 75.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1280.0 863 75.0
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1278.1 858 76.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1275.4 863 74.9
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1265.0 856 75.5
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1255.0 879 72.6
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1252.3 882 72.9
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1250.3 877 72.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1236.5 929 68.9
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1235.3 856 74.4
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1234.9 881 73.3
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1234.6 856 74.4
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1227.6 856 74.2
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1223.8 890 72.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1215.3 884 70.1
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 794 76.6
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1203.3 864 71.1
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1199.5 877 70.2
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1195.3 878 69.9
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1194.1 886 69.3
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1194.1 886 69.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1191.4 883 69.2
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1189.9 880 69.2
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1189.1 1007 63.4
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1184.1 855 70.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1179.9 861 69.7
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1177.2 855 69.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1174.8 867 69.1
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1174.8 837 72.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1172.1 844 71.6
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 949 65.3
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1168.7 871 68.1
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1167.5 879 68.6
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1163.7 880 67.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1160.6 882 68.7
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1158.7 875 67.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1156.0 880 68.3
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1156.0 902 67.1
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1154.4 898 67.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1151.3 881 68.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1149.0 875 68.2
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1130.5 812 71.8
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1121.3 954 63.2
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1109.0 875 66.4
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1106.3 874 65.7
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1104.7 854 66.7
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1102.4 891 64.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1097.0 878 64.6
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1092.4 855 65.6
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1077.0 883 64.6
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1076.6 872 64.8
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 5.9e-310 1067.4 874 64.2
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 5.0e-309 1064.3 850 64.5
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.1e-303 1044.6 840 64.8
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.7e-302 1042.0 873 62.9
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 5.9e-302 1040.8 866 63.7
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 8.6e-301 1036.9 863 63.5
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.4e-295 1019.6 857 62.5
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 5.4e-295 1017.7 873 62.0
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.3e-293 1013.1 857 62.1
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 7.3e-292 1007.3 857 62.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 5.8e-289 997.7 867 61.1
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 2.4e-287 992.3 865 61.0
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 4.7e-283 978.0 854 61.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.1e-282 976.9 854 61.5
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-282 976.9 854 61.5
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.3e-282 975.7 854 61.5
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.1e-282 975.3 857 61.1
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 6.8e-282 974.2 900 59.1
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 5.6e-276 954.5 854 60.3
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 9.5e-276 953.7 851 60.3
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.4e-271 939.9 768 63.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 5.1e-269 931.4 852 58.6
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.4e-266 923.3 877 56.9
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.1e-255 887.1 856 58.2
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.5e-244 850.1 888 55.7
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 6.5e-240 834.7 790 58.0
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.5e-233 812.0 718 60.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.2e-225 787.3 793 57.1
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.2e-216 756.5 525 72.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 5.7e-196 688.7 619 59.1
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.1e-194 682.9 904 46.6
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.1e-194 682.9 904 45.6
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.8e-181 640.6 399 80.2
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.1e-174 617.1 369 82.7
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-166 591.3 848 42.5
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 3.4e-164 583.2 475 65.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.0e-160 571.6 435 67.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 8.1e-158 562.0 414 70.0
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.4e-157 561.2 391 73.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 9.6e-127 458.8 511 50.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.9e-111 407.9 273 74.0
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.0e-96 359.0 355 55.8
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.1e-93 347.1 549 41.5
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.1e-93 347.1 549 41.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.4e-85 321.2 175 88.6
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.7e-83 315.1 283 61.8
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.2e-79 302.4 280 56.4
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.2e-74 283.9 151 90.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 9.4e-74 282.7 862 29.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-72 277.7 373 46.6
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.6e-63 248.1 137 88.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.3e-62 243.0 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.7e-57 227.3 179 64.2
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.3e-50 204.5 117 76.9
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.7e-49 200.7 333 38.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 9.2e-45 186.4 224 42.0
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.3e-35 156.0 187 51.3
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 8.4e-30 136.7 87 78.2
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 5.4e-29 134.0 270 31.9
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 2.5e-26 125.2 128 50.8
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 4.8e-25 120.9 162 43.2
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 3.6e-17 94.7 128 42.2
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 9.0e-16 90.1 234 28.2
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.4e-15 88.2 58 67.2
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.4e-15 88.2 81 56.8
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 4.9e-14 84.3 117 41.9
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.4e-14 84.0 55 72.7
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.4e-14 83.6 55 72.7
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 4.2e-13 81.3 64 60.9
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.1e-12 79.0 61 62.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-10 72.8 33 93.9
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 4.9e-06 57.8 62 45.2
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 8.4e-06 57.0 47 53.2


User provided reference genes

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