Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 5.0e-99 364.4 178 100.0
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.1e-24 117.5 108 65.7
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 3.7e-17 92.4 119 45.4
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 6.9e-16 88.2 99 52.5
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 2.6e-15 86.3 89 50.6
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.4e-15 85.9 89 50.6
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 7.7e-15 84.7 89 50.6
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 1.0e-14 84.3 98 46.9
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.0e-14 84.3 98 44.9
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.3e-14 84.0 98 44.9
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.9e-14 82.8 90 51.1
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 2.9e-14 82.8 89 49.4
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 2.9e-14 82.8 90 48.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 5.0e-14 82.0 98 43.9
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 8.5e-14 81.3 89 48.3
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 1.4e-13 80.5 98 46.9
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.4e-13 80.5 93 47.3
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 2.5e-13 79.7 90 47.8
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 5.5e-13 78.6 98 45.9
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 7.2e-13 78.2 98 45.9
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 9.4e-13 77.8 90 46.7
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 9.4e-13 77.8 98 45.9
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.2e-12 77.4 107 45.8
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.2e-12 77.4 104 42.3
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.1e-12 76.6 89 47.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.1e-12 76.6 98 42.9
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.7e-12 76.3 98 43.9
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 2.7e-12 76.3 98 44.9
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.7e-12 76.3 88 47.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.7e-12 76.3 88 47.7
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.6e-12 75.9 89 49.4
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 3.6e-12 75.9 92 45.7
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 3.6e-12 75.9 90 46.7
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 4.7e-12 75.5 89 47.2
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.7e-12 75.5 90 48.9
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.0e-12 74.7 89 46.1
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 8.0e-12 74.7 88 46.6
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.0e-11 74.3 90 46.7
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.0e-11 74.3 93 45.2
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.0e-11 74.3 98 42.9
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.0e-11 74.3 88 46.6
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.0e-11 74.3 90 45.6
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.4e-11 73.9 89 46.1
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.8e-11 73.6 95 44.2
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.8e-11 73.6 91 45.1
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.8e-11 73.6 95 42.1
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.8e-11 73.6 99 38.4
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 2.3e-11 73.2 98 43.9
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 2.3e-11 73.2 122 36.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 3.0e-11 72.8 84 48.8
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 3.9e-11 72.4 99 41.4
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 3.9e-11 72.4 89 46.1
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 5.2e-11 72.0 90 45.6
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 8.8e-11 71.2 102 40.2
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 8.8e-11 71.2 102 40.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 8.8e-11 71.2 122 36.9
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.1e-10 70.9 89 46.1
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 1.5e-10 70.5 122 36.9
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.5e-10 70.5 98 39.8
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.0e-10 70.1 122 35.2
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 2.0e-10 70.1 103 41.7
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.0e-10 70.1 88 44.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 2.6e-10 69.7 98 42.9
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 3.3e-10 69.3 102 39.2
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.3e-10 69.3 71 56.3
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 4.4e-10 68.9 122 35.2
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 4.4e-10 68.9 102 39.2
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 4.4e-10 68.9 98 39.8
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 4.4e-10 68.9 89 42.7
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 5.7e-10 68.6 122 35.2
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 5.7e-10 68.6 98 38.8
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.4e-10 68.2 83 47.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 9.7e-10 67.8 122 34.4
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 9.7e-10 67.8 83 47.0
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.3e-09 67.4 89 40.4
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.7e-09 67.0 98 38.8
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.7e-09 67.0 98 38.8
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.7e-09 67.0 90 43.3
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.2e-09 66.6 71 49.3
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.8e-09 66.2 90 44.4
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.8e-09 66.2 89 40.4
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 3.7e-09 65.9 90 42.2
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 6.3e-09 65.1 88 38.6
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 8.2e-09 64.7 90 43.3
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 8.2e-09 64.7 89 37.1
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 8.2e-09 64.7 89 38.2
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.1e-08 64.3 89 40.4
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.1e-08 64.3 89 40.4
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.1e-08 64.3 88 38.6
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 1.1e-08 64.3 85 43.5
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.8e-08 63.5 90 41.1
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.4e-08 63.2 90 41.1
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.4e-08 63.2 111 35.1
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 3.1e-08 62.8 72 44.4
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.1e-08 62.4 89 36.0
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.3e-08 62.0 102 35.3
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 1.2e-07 60.8 94 38.3
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 3.5e-07 59.3 89 40.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 4.5e-07 58.9 134 31.3
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 4.5e-07 58.9 87 40.2
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.7e-06 57.0 90 40.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.7e-06 57.0 128 32.8


User provided reference genes

Program Settings