Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.1e-185 652.1 316 100.0
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.1e-156 555.8 318 86.8
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.9e-110 402.1 322 66.5
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.4e-104 383.6 318 64.8
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 6.0e-103 378.3 349 60.5
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.3e-102 377.1 313 61.3
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.7e-102 376.7 349 60.2
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.1e-101 374.0 320 66.6
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 9.5e-101 370.9 317 64.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.2e-100 370.5 333 60.7
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 4.7e-100 368.6 321 63.6
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.1e-99 367.5 321 63.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.1e-99 367.5 321 63.2
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.8e-99 366.7 333 60.1
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 3.1e-99 365.9 318 62.6
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.1e-99 365.9 318 62.6
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.0e-99 365.5 333 60.1
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.2e-99 365.2 318 61.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.0e-98 363.2 321 62.9
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.6e-98 362.8 320 62.5
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.2e-96 355.9 332 62.0
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-95 354.0 320 61.2
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.0e-94 350.9 326 58.9
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 5.1e-94 348.6 320 60.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-92 344.0 315 59.0
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.2e-92 344.0 316 59.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-92 343.2 322 63.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.1e-91 340.9 321 58.3
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.1e-91 340.9 321 59.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.4e-91 339.7 322 62.4
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.4e-91 339.7 321 59.8
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.1e-91 339.3 317 58.7
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 4.0e-91 339.0 325 59.4
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.2e-91 338.6 322 62.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 6.8e-91 338.2 322 58.7
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 6.8e-91 338.2 318 58.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 8.9e-91 337.8 322 58.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-90 337.0 318 62.3
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-90 335.5 323 58.2
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 4.4e-90 335.5 320 60.3
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 9.9e-90 334.3 319 60.2
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-89 334.0 322 58.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 6.4e-89 331.6 321 57.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 6.4e-89 331.6 338 57.7
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.4e-89 331.3 322 58.7
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 8.4e-89 331.3 327 58.7
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.4e-88 330.5 327 56.3
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.4e-88 329.7 318 57.5
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-88 329.7 325 60.3
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 3.2e-88 329.3 323 60.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 4.2e-88 328.9 318 60.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 4.2e-88 328.9 325 57.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.6e-87 327.0 320 59.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.6e-87 327.0 319 56.7
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.1e-87 326.6 316 58.2
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.6e-87 325.5 323 59.1
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 6.0e-87 325.1 322 57.8
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 7.8e-87 324.7 325 57.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.3e-86 323.2 321 56.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 3.9e-86 322.4 321 57.3
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.1e-86 322.0 322 58.7
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.1e-85 320.9 321 57.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-85 320.1 323 56.3
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 7.3e-85 318.2 318 56.9
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.1e-84 316.6 310 59.7
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.6e-84 315.8 321 55.8
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.6e-84 315.8 317 57.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.4e-83 313.2 316 55.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 6.9e-83 311.6 298 59.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.4e-82 309.3 315 55.6
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 6.4e-81 305.1 319 53.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.1e-80 304.3 319 55.5
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.1e-80 304.3 310 58.4
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.2e-79 300.8 320 55.3
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.2e-79 300.8 326 51.5
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 7.8e-79 298.1 323 55.1
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 3.0e-78 296.2 332 53.6
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.3e-77 292.4 328 53.7
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.1e-75 287.7 310 52.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.5e-74 283.9 324 54.3
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 4.2e-72 275.8 324 51.5
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 7.9e-71 271.6 320 50.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.0e-70 269.6 325 52.0
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 5.1e-70 268.9 324 53.7
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.5e-69 267.3 321 53.9
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 7.4e-69 265.0 329 54.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 9.6e-69 264.6 320 50.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.3e-68 264.2 329 54.1
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.8e-67 260.4 266 59.4
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.1e-67 259.6 326 53.4
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 4.0e-67 259.2 271 56.5
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-66 257.3 326 53.1
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-66 257.3 326 53.1
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-66 256.9 323 48.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.8e-66 255.4 322 47.8
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-65 253.4 329 47.7
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 4.9e-65 252.3 314 47.5
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 6.5e-65 251.9 324 50.9
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 8.4e-65 251.5 322 47.2
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.2e-63 247.7 405 41.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 7.9e-63 245.0 357 45.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.8e-62 243.8 356 46.9
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.1e-62 242.3 351 47.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.9e-61 240.4 333 46.5
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 3.3e-61 239.6 327 49.2
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.6e-60 237.3 319 43.9
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.8e-60 235.7 322 47.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.9e-57 226.5 299 48.8
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.1e-56 224.6 254 52.8
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 7.1e-56 221.9 275 50.5
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 9.3e-56 221.5 322 42.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.8e-51 207.2 319 45.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.9e-48 197.2 211 55.0
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.5e-45 187.6 303 43.9
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 9.1e-43 178.3 365 40.0
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.1e-43 178.3 145 63.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.0e-42 177.2 176 61.4
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 2.9e-41 173.3 326 40.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 3.2e-40 169.9 313 40.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 4.7e-39 166.0 265 44.9
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 7.9e-39 165.2 148 62.8
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 7.4e-37 158.7 315 36.8
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 6.3e-36 155.6 179 54.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.1e-35 154.8 237 45.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.2e-33 147.1 148 58.1
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-32 144.8 189 44.4
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.9e-32 144.1 177 49.7
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.5e-32 143.7 115 64.3
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 9.4e-32 141.7 270 37.4
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.1e-31 140.6 166 50.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.7e-31 139.4 177 48.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 4.7e-31 139.4 115 61.7
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 6.1e-31 139.0 162 50.0
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 8.8e-30 135.2 171 46.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 8.8e-30 135.2 161 49.1
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-29 134.4 299 39.1
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-29 134.4 171 46.8
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-28 131.0 103 67.0
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 4.8e-28 129.4 118 58.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.1e-27 126.3 300 38.0
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 7.0e-27 125.6 300 38.0
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 9.1e-27 125.2 300 38.0
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-26 124.8 119 59.7
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.3e-25 121.3 133 54.9
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 5.0e-25 119.4 270 36.7
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.7e-23 112.8 130 50.0
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.2e-17 94.0 78 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.5e-16 90.5 191 38.2
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.6e-15 87.8 103 47.6
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-13 81.6 71 59.2
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.7e-13 79.3 155 40.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.7e-12 76.6 52 69.2
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.5e-08 64.7 53 58.5
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 4.2e-08 63.2 61 59.0
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 9.5e-08 62.0 57 56.1
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.0e-06 58.5 38 73.7
MCO11G019 Micromonas commoda HOM05D004212 ORTHO05D005128 1.4e-06 58.2 349 28.4
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 2.3e-06 57.4 68 47.1
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 2.3e-06 57.4 68 47.1
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 3.0e-06 57.0 386 24.9
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 6.8e-06 55.8 69 44.9


User provided reference genes

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