Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 0.0e+00 1337.0 677 100.0
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 5.5e-239 831.2 653 64.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.3e-237 825.9 677 63.4
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 2.7e-230 802.4 684 61.1
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 8.0e-230 800.8 684 60.2
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 7.5e-228 794.3 645 62.3
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.8e-224 781.9 642 61.8
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 1.2e-222 776.9 665 60.2
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 8.0e-222 774.2 686 58.7
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.4e-220 768.8 669 59.8
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 1.6e-217 760.0 696 58.3
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 3.5e-217 758.8 594 64.6
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.3e-216 756.1 660 57.4
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.0e-216 755.0 669 59.9
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 8.9e-213 744.2 689 58.1
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 8.9e-213 744.2 689 58.1
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 9.8e-212 740.7 687 57.5
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 7.0e-210 734.6 697 56.5
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 3.3e-207 725.7 673 56.0
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.8e-206 722.6 614 60.7
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 8.9e-205 717.6 644 57.6
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 1.2e-201 707.2 614 57.5
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 3.5e-201 705.7 645 56.6
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.0e-200 704.1 709 54.3
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.7e-200 703.4 619 58.0
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 3.0e-200 702.6 590 59.3
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 8.6e-200 701.0 587 59.5
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 4.3e-199 698.7 650 56.8
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 1.7e-195 686.8 642 56.1
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 3.7e-195 685.6 662 53.3
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 3.2e-194 682.6 645 55.3
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 1.2e-193 680.6 655 55.9
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-192 677.2 680 56.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 3.0e-192 676.0 500 66.4
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 8.6e-192 674.5 557 58.3
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 2.8e-190 669.5 623 54.4
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 5.8e-188 661.8 677 51.0
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.1e-186 657.5 527 60.2
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 5.1e-184 648.7 546 56.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 3.6e-182 642.5 486 65.6
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 8.4e-179 631.3 648 50.5
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 1.4e-178 630.6 587 54.3
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.6e-177 627.1 625 51.8
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 1.6e-177 627.1 600 53.8
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.7e-177 626.3 658 51.2
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.8e-174 615.5 554 58.5
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 6.2e-174 615.1 675 49.3
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.4e-173 614.0 636 50.0
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 3.4e-172 609.4 529 58.8
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 5.8e-172 608.6 521 58.7
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 2.1e-169 600.1 465 65.2
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-168 597.4 683 50.1
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 1.3e-168 597.4 447 62.6
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 3.9e-168 595.9 498 59.4
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 6.7e-168 595.1 546 54.9
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 6.7e-168 595.1 678 50.1
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.3e-166 590.9 679 48.0
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.3e-166 590.9 668 47.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.7e-166 589.3 604 51.5
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 1.5e-164 583.9 500 57.6
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.3e-160 570.9 591 50.1
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 1.8e-160 570.5 573 50.4
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 3.9e-160 569.3 617 47.5
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 6.7e-160 568.5 681 45.8
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 1.9e-159 567.0 619 48.8
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 1.9e-159 567.0 619 48.8
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 6.2e-158 562.0 576 50.2
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 2.4e-157 560.1 637 46.8
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 3.1e-157 559.7 652 46.5
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 9.3e-154 548.1 627 47.0
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 4.6e-153 545.8 627 46.9
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 4.6e-153 545.8 423 61.0
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.0e-152 543.1 606 51.3
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 3.0e-152 543.1 498 53.0
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 3.9e-152 542.7 492 55.3
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.8e-150 535.8 492 55.1
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 4.1e-149 532.7 410 62.0
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 4.5e-148 529.3 405 64.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 1.6e-145 520.8 637 43.0
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 3.0e-144 516.5 412 61.2
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 9.7e-143 511.5 608 44.6
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 9.7e-143 511.5 599 47.1
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 1.2e-137 494.6 525 50.5
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.6e-137 494.2 497 50.1
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 3.6e-137 493.0 497 50.1
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 2.0e-135 487.3 570 45.8
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 4.4e-135 486.1 556 48.4
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.1e-133 479.9 569 46.7
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 4.8e-126 456.1 409 57.2
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 6.5e-123 445.7 649 40.2
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 5.5e-114 416.0 342 59.1
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.8e-112 411.0 463 50.1
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 9.8e-111 405.2 332 59.3
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.8e-109 401.0 317 60.6
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.2e-108 398.3 554 43.1
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 2.9e-107 393.7 568 43.1
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.5e-106 390.6 587 41.1
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 9.5e-90 335.5 492 39.8
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.6e-89 334.7 245 62.9
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.8e-89 334.0 372 54.3
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 4.7e-81 306.6 275 54.9
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 6.8e-72 276.2 298 54.0
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.0e-67 262.3 217 63.6
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 7.9e-52 209.5 247 53.0
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.3e-51 208.0 268 48.9
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 3.0e-51 207.6 277 49.1
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 5.6e-50 203.4 226 55.3
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 4.9e-46 190.3 207 51.2
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 3.7e-25 120.9 288 28.5
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 5.9e-23 113.6 148 47.3
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 3.3e-18 97.8 81 60.5
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 6.3e-17 93.6 54 70.4
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.3e-14 85.9 59 66.1
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.1e-13 82.8 67 64.2
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.4e-08 65.9 42 64.3
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 7.7e-07 60.1 38 65.8


User provided reference genes

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