Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 7.8e-161 570.5 300 100.0
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 8.7e-136 487.3 314 78.3
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 4.3e-135 485.0 315 77.8
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 1.3e-134 483.4 316 77.2
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 2.8e-134 482.3 315 76.8
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 3.6e-134 481.9 316 77.2
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.6e-134 481.9 316 77.2
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 4.8e-134 481.5 318 76.7
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 6.2e-134 481.1 321 76.9
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.4e-133 479.2 316 77.2
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 4.0e-133 478.4 316 76.6
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 2.0e-132 476.1 316 76.6
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 4.4e-132 474.9 315 76.5
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 4.4e-132 474.9 315 81.3
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 5.8e-132 474.6 315 76.2
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 5.8e-132 474.6 316 75.9
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 2.9e-131 472.2 315 75.9
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 4.9e-131 471.5 315 75.9
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 6.4e-131 471.1 315 75.6
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 9.3e-130 467.2 319 74.9
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 1.2e-129 466.8 318 75.8
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 2.1e-129 466.1 318 75.5
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 2.7e-129 465.7 316 74.1
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 3.5e-129 465.3 316 74.1
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 1.0e-128 463.8 314 74.5
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 1.1e-127 460.3 313 74.1
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 1.5e-127 459.9 321 73.5
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 5.6e-127 458.0 321 73.2
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 7.3e-127 457.6 295 77.3
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 3.6e-126 455.3 319 73.0
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 6.2e-126 454.5 312 77.9
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 4.0e-125 451.8 321 72.6
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 1.5e-124 449.9 323 71.5
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 2.6e-124 449.1 318 72.6
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 2.6e-124 449.1 316 70.6
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 7.6e-124 447.6 313 72.5
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 4.9e-123 444.9 320 72.2
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 8.4e-123 444.1 321 72.0
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 1.1e-122 443.7 320 72.2
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 1.1e-122 443.7 315 72.4
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 1.4e-122 443.4 320 71.9
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 1.4e-122 443.4 317 77.6
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 7.1e-122 441.0 315 72.4
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 1.2e-121 440.3 322 72.0
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.2e-121 440.3 317 73.5
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 3.5e-121 438.7 321 71.3
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 3.5e-121 438.7 320 71.9
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 4.6e-121 438.3 308 73.7
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 4.6e-121 438.3 309 72.5
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 6.0e-121 438.0 321 70.7
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 6.0e-121 438.0 322 72.0
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 1.0e-120 437.2 321 72.6
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 1.8e-120 436.4 322 70.5
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 3.0e-120 435.6 315 71.1
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 3.9e-120 435.3 322 70.5
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 5.1e-120 434.9 322 70.2
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 1.9e-119 433.0 322 69.9
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 1.9e-119 433.0 323 70.0
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 1.9e-119 433.0 322 69.9
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 1.9e-119 433.0 323 70.0
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 3.3e-119 432.2 318 72.3
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 3.3e-119 432.2 318 72.3
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 5.6e-119 431.4 320 70.9
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 2.1e-118 429.5 325 69.2
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 2.8e-118 429.1 333 70.0
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 1.8e-117 426.4 285 76.8
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 6.9e-117 424.5 285 76.1
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 1.2e-116 423.7 316 69.0
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 1.3e-115 420.2 285 81.4
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 3.8e-115 418.7 283 76.3
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 1.8e-109 399.8 420 54.8
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 5.3e-109 398.3 384 58.6
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 1.9e-106 389.8 266 78.2
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 4.3e-103 378.6 255 74.1
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 4.3e-103 378.6 311 61.7
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 9.7e-103 377.5 262 75.2
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 1.3e-102 377.1 291 70.4
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 1.1e-101 374.0 317 65.9
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 3.1e-101 372.5 320 63.8
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 1.2e-100 370.5 262 75.2
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 2.6e-100 369.4 290 65.9
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 3.8e-99 365.5 275 70.5
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 3.2e-98 362.5 265 70.2
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 1.6e-97 360.1 285 67.4
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 3.6e-97 359.0 300 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 6.1e-97 358.2 307 59.6
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 2.0e-95 353.2 251 72.5
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 1.3e-94 350.5 315 62.2
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 1.7e-94 350.1 234 77.8
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 2.2e-94 349.7 297 65.0
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 3.7e-94 349.0 347 58.8
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 1.9e-90 336.7 307 56.7
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 1.4e-88 330.5 279 69.5
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 8.8e-88 327.8 644 37.0
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 2.8e-86 322.8 298 54.7
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 1.7e-83 313.5 295 53.6
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 3.3e-79 299.3 265 58.1
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 9.4e-74 281.2 324 53.1
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.2e-71 274.2 314 52.5
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 2.8e-70 269.6 190 72.6
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 2.7e-68 263.1 233 63.5
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.3e-67 260.8 308 48.7
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 6.3e-62 241.9 190 66.8
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 1.2e-60 237.7 206 58.7
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 2.3e-59 233.4 171 64.9
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 4.3e-58 229.2 238 55.9
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 5.2e-56 222.2 315 47.6
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 1.2e-55 221.1 163 67.5
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 5.7e-55 218.8 158 72.8
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 5.4e-53 212.2 152 69.1
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 9.2e-53 211.5 190 62.1
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 5.0e-43 179.1 142 64.8
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 2.5e-42 176.8 146 63.0
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 2.6e-39 166.8 131 65.6
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 6.2e-33 145.6 72 93.1
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 2.3e-32 143.7 101 69.3
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 3.4e-31 139.8 105 68.6
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 5.1e-27 125.9 273 33.0
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 5.1e-27 125.9 255 30.6
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 2.5e-18 97.1 80 63.8
MD15G1048200 Malus domestica HOM05D006118 ORTHO05D007750 8.4e-14 82.0 50 78.0
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 1.2e-12 78.2 359 24.5
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 6.0e-12 75.9 59 59.3
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 4.3e-10 69.7 54 68.5
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 1.2e-07 61.6 135 35.6
HPP92_016211 Vanilla planifolia HOM05D006118 ORTHO05D007750 7.6e-07 58.9 52 55.8


User provided reference genes

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