Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.3e-81 305.4 146 100.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 7.6e-69 263.8 144 82.6
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.4e-67 259.6 138 87.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.2e-67 258.5 141 83.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.5e-66 255.0 141 80.9
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.6e-66 254.6 146 80.1
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 4.6e-66 254.6 146 79.5
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 4.6e-66 254.6 146 79.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.6e-66 254.6 145 79.3
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 4.6e-66 254.6 141 81.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 4.6e-66 254.6 146 81.5
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 6.0e-66 254.2 146 79.5
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.8e-66 253.8 146 78.8
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 1.3e-65 253.1 146 78.8
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.1e-65 251.1 139 82.7
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 8.7e-65 250.4 146 77.4
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.1e-64 250.0 137 83.9
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 2.5e-64 248.8 146 76.7
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.5e-64 248.8 146 78.1
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 4.3e-64 248.1 151 76.8
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.3e-64 248.1 144 79.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.3e-64 248.1 143 79.7
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.3e-64 247.3 139 79.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.3e-64 247.3 143 79.7
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.6e-63 246.1 146 76.0
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.6e-63 246.1 140 80.0
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.8e-63 245.4 142 78.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.6e-63 245.0 146 76.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 4.8e-63 244.6 143 79.0
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 6.2e-63 244.2 162 71.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 6.2e-63 244.2 146 75.3
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 8.1e-63 243.8 144 79.9
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.1e-62 243.4 142 78.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-62 243.4 146 73.3
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.4e-62 243.0 146 76.7
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.8e-62 242.7 143 76.2
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.4e-62 242.3 143 76.2
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.4e-62 242.3 144 78.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 3.1e-62 241.9 145 75.2
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.0e-62 241.5 141 77.3
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.9e-62 240.7 141 79.4
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.9e-62 240.7 141 79.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.2e-61 240.0 144 77.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.0e-61 239.2 141 78.7
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.6e-61 238.8 143 74.8
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 2.6e-61 238.8 143 74.8
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 3.4e-61 238.4 144 77.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 5.8e-61 237.7 146 76.0
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 9.9e-61 236.9 143 74.8
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.9e-61 236.9 141 75.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 9.9e-61 236.9 140 78.6
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 9.9e-61 236.9 142 75.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.3e-60 236.5 138 78.3
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.7e-60 236.1 146 75.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-60 236.1 146 75.3
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.9e-60 235.3 133 78.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.9e-60 235.3 140 75.7
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.9e-60 235.3 144 75.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 73.4
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-59 232.6 146 74.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.4e-59 232.3 146 74.0
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.2e-59 231.9 146 74.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 7.1e-59 230.7 141 73.8
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 7.1e-59 230.7 140 73.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 7.1e-59 230.7 145 72.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 9.3e-59 230.3 174 64.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-58 229.6 138 74.6
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.6e-58 229.6 138 74.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.1e-58 229.2 146 74.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.7e-58 228.8 144 75.7
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 4.6e-58 228.0 140 73.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.6e-58 228.0 140 73.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.6e-58 228.0 138 73.9
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 4.6e-58 228.0 146 74.0
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 6.0e-58 227.6 140 74.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 6.0e-58 227.6 140 75.0
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 7.9e-58 227.3 148 72.3
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 7.9e-58 227.3 142 73.9
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 2.3e-57 225.7 165 67.3
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.0e-57 225.3 121 85.1
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.9e-57 224.9 143 76.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.9e-57 224.9 140 74.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.7e-57 224.2 140 72.1
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.5e-56 223.0 137 70.8
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.3e-56 221.9 143 71.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 4.3e-56 221.5 143 70.6
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 5.6e-56 221.1 121 82.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-55 219.9 137 70.1
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-55 219.5 142 72.5
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-55 219.5 142 72.5
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.8e-55 218.0 144 70.1
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 6.2e-55 217.6 140 70.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.8e-54 216.1 140 71.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.4e-54 215.7 140 70.0
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.1e-54 215.3 143 69.2
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.3e-54 214.5 143 68.5
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.0e-54 213.8 140 72.1
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.2e-53 213.4 143 69.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.2e-53 213.4 139 71.2
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-53 213.0 146 65.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.0e-53 212.6 137 70.1
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.6e-53 212.2 141 69.5
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.6e-53 212.2 143 68.5
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 4.5e-53 211.5 125 78.4
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.3e-52 209.9 147 68.7
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 2.9e-52 208.8 139 68.3
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.4e-52 207.6 137 70.8
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.4e-51 205.7 130 70.0
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 7.1e-51 204.1 140 67.9
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.6e-50 203.0 210 52.4
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 2.1e-50 202.6 121 76.9
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-50 202.6 143 65.7
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.9e-50 200.7 143 65.0
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 7.9e-50 200.7 143 67.8
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.0e-49 200.3 130 70.0
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 5.1e-49 198.0 147 62.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.5e-48 195.7 145 60.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-47 193.4 117 76.1
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.3e-47 193.4 117 75.2
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-47 192.6 141 60.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.7e-47 191.8 117 75.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 4.8e-47 191.4 143 60.1
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.8e-47 191.4 144 59.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 6.2e-47 191.0 147 61.9
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.0e-46 187.2 138 61.6
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 9.0e-46 187.2 143 58.7
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 9.0e-46 187.2 111 74.8
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 4.5e-45 184.9 115 74.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-44 183.3 111 76.6
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.9e-43 179.5 140 61.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 4.2e-43 178.3 116 68.1
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 7.9e-42 174.1 140 60.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.4e-40 167.5 134 56.0
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.1e-38 162.2 98 71.4
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-34 150.2 125 56.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-34 150.2 125 56.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.5e-32 142.5 131 51.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 7.4e-32 141.0 85 74.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 5.5e-27 124.8 139 45.3
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 9.4e-27 124.0 137 43.8
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 3.6e-26 122.1 99 55.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 4.7e-26 121.7 99 54.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-25 119.8 127 45.7
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 5.7e-24 114.8 149 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 7.4e-24 114.4 134 41.0
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.3e-23 113.6 103 52.4
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.7e-23 112.1 133 42.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.2e-23 110.9 134 40.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 9.1e-22 107.5 141 38.3
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.5e-21 106.7 133 39.1
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.2e-19 97.8 139 38.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.3e-17 92.8 54 75.9
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.5e-16 90.1 55 76.4
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 5.7e-16 88.2 112 42.9
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 7.4e-16 87.8 55 74.5
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 7.4e-16 87.8 55 74.5
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 7.4e-16 87.8 55 74.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 8.2e-15 84.3 117 42.7
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.4e-14 82.8 68 52.9
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 4.1e-14 82.0 59 59.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 7.0e-14 81.3 135 34.1
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 5.9e-13 78.2 82 45.1
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.9e-11 73.2 49 65.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.2e-10 70.5 117 35.0
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 8.8e-09 64.3 32 84.4
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.4e-08 62.0 63 52.4
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 2.8e-07 59.3 39 71.8


User provided reference genes

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