Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.6e-197 691.0 353 100.0
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.1e-166 590.1 351 87.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.3e-87 326.6 394 50.8
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.6e-85 320.5 363 53.4
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.9e-82 309.7 359 52.1
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 6.1e-80 302.0 360 51.9
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 3.3e-78 296.2 368 50.3
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 5.0e-74 282.3 354 48.3
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 6.5e-74 282.0 370 48.9
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.4e-71 274.2 368 46.7
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.9e-71 272.7 361 48.2
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.9e-71 272.7 354 48.6
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.7e-70 268.9 321 49.8
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 5.3e-68 262.3 363 44.6
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 7.0e-68 261.9 367 47.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 2.2e-66 256.9 375 46.7
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 6.5e-66 255.4 386 44.8
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.5e-65 253.4 369 46.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 6.1e-64 248.8 353 45.9
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.5e-62 241.9 355 45.1
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 7.5e-62 241.9 355 45.1
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.7e-61 240.7 368 43.5
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 8.2e-61 238.4 378 42.3
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.1e-60 238.0 353 43.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.3e-60 235.7 354 45.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.2e-59 234.6 362 42.3
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.7e-59 233.4 384 41.7
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.9e-59 232.3 382 42.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.0e-58 231.5 379 42.5
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.0e-58 229.2 353 43.1
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.5e-57 225.7 169 67.5
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.4e-57 224.9 361 42.1
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 9.4e-57 224.9 373 42.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.2e-56 224.6 375 43.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 5.2e-55 219.2 356 40.2
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.2e-53 213.8 364 41.2
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.4e-52 211.1 358 40.8
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 7.0e-52 208.8 301 43.9
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 9.1e-52 208.4 363 39.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 9.1e-52 208.4 360 40.3
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.2e-51 208.0 368 39.9
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.5e-51 206.1 376 40.4
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.7e-51 205.3 376 41.5
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.7e-51 205.3 333 42.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.7e-50 204.1 383 39.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.8e-50 203.0 376 41.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.9e-49 200.7 369 39.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 7.2e-49 198.7 376 40.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 6.8e-47 192.2 358 39.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-46 189.9 359 38.2
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 5.7e-46 189.1 361 38.2
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.3e-45 188.0 357 37.8
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.3e-45 188.0 339 40.1
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.3e-45 188.0 371 38.3
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.2e-45 187.2 362 37.3
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.8e-45 186.8 366 39.3
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.7e-45 186.4 359 38.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 6.3e-45 185.7 357 37.8
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 6.3e-45 185.7 357 37.8
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 6.3e-45 185.7 357 37.8
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 5.9e-43 179.1 361 38.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.0e-42 178.3 350 39.1
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.7e-42 177.6 358 38.3
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.9e-42 176.8 383 35.5
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.9e-42 176.8 286 41.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 6.6e-42 175.6 365 36.4
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 8.6e-42 175.3 361 38.0
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 2.5e-41 173.7 357 35.9
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.6e-40 171.0 357 38.7
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 6.1e-40 169.1 353 36.8
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.0e-40 168.7 363 36.6
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 3.0e-39 166.8 204 48.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.0e-39 166.8 344 36.6
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 5.2e-39 166.0 359 35.4
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 5.2e-39 166.0 359 35.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 1.2e-38 164.9 356 36.0
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.0e-38 164.1 378 37.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-37 160.6 146 56.8
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 2.2e-37 160.6 146 56.8
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-36 157.9 228 42.5
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.4e-36 157.1 354 33.6
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 3.2e-36 156.8 376 33.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 4.1e-36 156.4 228 41.7
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.0e-35 154.1 355 34.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 7.8e-35 152.1 358 33.5
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.3e-34 151.4 382 34.0
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.3e-34 151.4 377 34.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.3e-34 150.6 197 45.7
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.9e-34 149.8 325 35.4
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 6.6e-34 149.1 398 33.2
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 6.6e-34 149.1 355 34.9
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 8.6e-34 148.7 322 37.3
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.5e-33 147.1 346 34.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.3e-33 146.7 352 33.2
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 3.3e-33 146.7 358 33.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 7.3e-33 145.6 360 33.1
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 7.3e-33 145.6 360 33.1
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 7.3e-33 145.6 363 33.6
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 7.3e-33 145.6 373 33.0
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.2e-32 144.8 352 35.2
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-32 144.4 366 35.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 3.6e-32 143.3 404 32.7
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 4.7e-32 142.9 352 32.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.0e-32 142.1 352 34.1
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.1e-31 141.7 212 42.0
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.4e-31 141.4 145 51.0
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.4e-31 141.4 185 42.7
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.4e-31 141.4 144 54.9
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.0e-30 137.5 377 31.8
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.0e-30 137.5 283 37.1
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.6e-30 137.1 361 31.6
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 9.8e-30 135.2 133 54.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.3e-29 134.8 228 38.6
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.7e-29 133.3 351 33.9
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 4.9e-29 132.9 395 29.9
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.9e-29 132.9 229 34.9
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.4e-28 130.6 350 32.9
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.2e-28 130.2 166 43.4
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.2e-28 130.2 353 32.9
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.5e-27 126.7 339 33.3
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.7e-26 124.4 391 29.7
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 5.6e-25 119.4 130 48.5
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 9.5e-25 118.6 169 45.0
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 2.1e-24 117.5 145 48.3
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 6.2e-24 115.9 341 31.4
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 3.2e-20 103.6 356 31.7
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.7e-18 97.8 148 39.2
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.0e-18 97.1 117 43.6
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.1e-17 95.1 284 31.3
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 6.2e-16 89.4 336 29.2
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.8e-15 87.8 127 41.7
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 6.8e-15 85.9 264 30.7
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.6e-14 84.0 84 52.4
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 5.8e-14 82.8 370 28.4
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 1.7e-13 81.3 218 34.4
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.1e-11 74.3 117 36.8
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 7.8e-11 72.4 103 39.8
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.3e-10 71.6 145 33.8
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.4e-07 61.6 96 39.6
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 6.9e-07 59.3 125 28.8
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-06 58.5 132 31.8
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 2.0e-06 57.8 187 29.4
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.6e-06 57.4 280 25.0


User provided reference genes

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