Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 7.5e-261 903.3 444 100.0
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.5e-144 516.9 411 65.5
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 4.4e-144 515.4 410 65.6
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.8e-143 512.7 405 64.0
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.1e-142 509.2 405 63.2
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 3.9e-140 502.3 407 63.4
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 8.6e-140 501.1 415 63.4
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.5e-139 500.4 407 62.4
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.5e-139 499.6 409 63.8
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 1.2e-138 497.3 404 64.1
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 4.4e-136 488.8 405 63.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.2e-133 480.7 409 62.8
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 1.6e-133 480.3 414 62.8
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 7.8e-133 478.0 414 60.6
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 8.6e-132 474.6 406 62.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.8e-129 466.8 413 61.7
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.8e-129 466.8 402 61.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 3.1e-129 466.1 414 58.7
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 6.8e-129 464.9 415 59.0
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.5e-128 463.8 410 60.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 2.0e-128 463.4 411 61.1
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 3.4e-128 462.6 358 66.5
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.3e-127 460.7 436 56.9
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 6.4e-127 458.4 415 60.5
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.4e-126 457.2 404 59.9
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.9e-126 456.8 420 59.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.4e-126 456.4 402 60.2
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 3.2e-126 456.1 404 59.9
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.7e-125 453.0 401 58.1
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.3e-124 450.7 403 58.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.7e-124 450.3 450 55.6
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 2.3e-124 449.9 418 58.9
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 3.3e-123 446.0 407 58.0
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 4.3e-123 445.7 407 59.7
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 9.5e-123 444.5 447 54.4
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 8.1e-122 441.4 407 58.5
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.1e-121 441.0 405 58.0
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.4e-121 440.7 444 54.5
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 4.0e-121 439.1 418 56.9
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 6.8e-121 438.3 412 58.0
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 7.5e-120 434.9 455 53.2
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 2.2e-119 433.3 405 57.3
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.7e-119 432.6 406 57.1
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 8.3e-119 431.4 404 57.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 3.2e-118 429.5 410 56.3
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 7.1e-118 428.3 407 56.5
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.1e-117 426.8 408 56.9
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 4.6e-117 425.6 402 58.2
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 3.9e-116 422.5 413 55.4
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.1e-115 421.0 401 56.6
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.9e-115 420.2 432 53.7
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.2e-114 417.5 371 60.4
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.2e-114 417.5 388 57.5
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.1e-114 416.8 416 55.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.1e-114 414.8 419 55.4
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.4e-113 414.1 407 56.0
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.4e-113 414.1 491 49.1
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 2.9e-111 406.4 409 52.1
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.8e-111 406.0 416 53.8
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 8.4e-111 404.8 411 54.3
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 3.6e-106 389.4 538 45.0
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 6.2e-106 388.7 308 64.6
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.0e-104 383.6 312 64.7
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 1.7e-103 380.6 312 64.1
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.2e-101 374.4 461 48.4
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.6e-101 374.0 309 63.4
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.6e-101 372.5 412 53.2
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.3e-100 370.2 309 61.5
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 8.7e-100 368.2 327 62.1
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.3e-99 365.9 411 50.4
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 2.4e-97 360.1 311 61.1
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 3.1e-97 359.8 413 50.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.3e-97 359.0 311 57.9
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 9.0e-97 358.2 330 60.0
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.9e-96 354.8 307 59.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.3e-95 354.4 416 49.5
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.4e-94 350.9 286 61.9
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 1.2e-93 347.8 399 50.1
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.6e-93 347.4 316 59.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 6.0e-93 345.5 287 61.3
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.8e-89 334.0 425 46.8
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 6.5e-87 325.5 447 44.1
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 9.3e-86 321.6 449 44.3
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.7e-85 320.1 299 58.2
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.9e-83 313.9 434 46.1
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.7e-83 312.4 295 60.0
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.3e-82 311.2 317 56.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.3e-81 305.8 425 42.8
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-78 297.7 319 55.5
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.6e-77 294.3 314 52.2
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 4.6e-77 292.7 463 39.1
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 7.9e-77 292.0 294 54.1
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.1e-75 288.1 417 45.8
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.1e-75 288.1 310 52.9
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.5e-75 287.0 581 35.6
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.0e-72 277.3 277 54.2
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.9e-72 275.8 408 41.9
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.5e-67 261.2 299 50.8
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.2e-64 251.5 312 46.2
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 9.4e-62 241.9 301 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 2.8e-58 230.3 317 44.5
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.3e-57 226.1 155 73.5
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.1e-53 214.2 260 46.5
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 2.7e-53 213.8 266 42.5
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.7e-53 213.0 406 36.9
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-52 211.5 303 43.2
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 2.6e-48 197.2 287 42.5
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 3.2e-46 190.3 184 54.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.4e-41 174.9 361 34.1
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.4e-41 172.9 241 44.8
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.3e-34 151.8 98 73.5
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 2.8e-34 150.6 101 73.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.5e-32 143.3 285 33.3
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.4e-27 126.7 82 72.0
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 7.5e-27 125.9 85 70.6
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 7.8e-24 115.9 88 65.9
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.2e-21 108.6 242 34.7
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 6.2e-21 106.3 89 61.8
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.6e-19 100.9 116 47.4
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.3e-15 88.6 67 64.2
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-13 81.6 93 49.5
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.4e-12 78.6 86 48.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.1e-12 77.4 251 28.3
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.9e-12 75.9 67 53.7
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.4e-11 73.9 61 55.7
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.4e-11 73.6 90 43.3
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 7.8e-08 62.8 59 59.3


User provided reference genes

Program Settings