Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 0.0e+00 1146.7 591 100.0
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 9.9e-176 620.9 598 61.7
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 8.6e-71 272.3 712 32.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 8.1e-69 265.8 719 32.1
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 3.5e-64 250.4 790 32.3
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 7.8e-64 249.2 792 30.1
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 1.2e-61 241.9 759 30.4
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 3.4e-59 233.8 741 30.1
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 7.1e-57 226.1 794 30.4
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 7.8e-56 222.6 753 29.6
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 6.6e-55 219.5 747 29.7
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 7.3e-54 216.1 813 30.1
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 1.2e-51 208.8 368 38.0
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 5.8e-51 206.5 397 39.5
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 6.7e-47 193.0 186 53.2
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 8.7e-47 192.6 274 45.6
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.2e-43 182.2 793 27.9
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 1.7e-42 178.3 348 39.1
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 3.2e-41 174.1 402 34.1
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 6.0e-40 169.9 135 62.2
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 7.9e-40 169.5 144 59.7
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 1.8e-39 168.3 206 47.1
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 1.9e-38 164.9 286 39.5
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 3.3e-38 164.1 634 29.5
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 2.8e-37 161.0 670 27.5
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 4.8e-37 160.2 659 27.5
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 6.2e-37 159.8 634 28.5
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 8.1e-37 159.5 126 58.7
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.4e-36 158.7 290 38.3
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.4e-36 157.9 134 53.7
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 3.4e-35 154.1 223 43.0
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.5e-35 153.7 510 27.8
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 1.3e-34 152.1 629 28.9
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 4.9e-34 150.2 611 27.5
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 6.5e-34 149.8 617 28.0
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 1.4e-33 148.7 624 27.4
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.5e-33 147.9 462 28.6
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 4.2e-33 147.1 785 26.2
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 4.2e-33 147.1 194 42.8
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 2.7e-32 144.4 391 30.4
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 4.6e-32 143.7 134 50.7
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 3.3e-30 137.5 195 43.1
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 7.4e-30 136.3 674 26.1
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 8.2e-29 132.9 108 58.3
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 2.4e-28 131.3 500 30.8
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 4.1e-28 130.6 645 26.5
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 5.0e-26 123.6 226 38.1
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 8.5e-26 122.9 224 36.2
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 2.5e-25 121.3 501 26.7
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 3.2e-25 120.9 649 25.7
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 2.1e-24 118.2 193 41.5
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 2.1e-24 118.2 135 45.2
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.9e-23 114.0 111 51.4
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 1.9e-22 111.7 320 31.9
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 4.3e-22 110.5 575 27.5
Atru.chr1.1237 Acer truncatum HOM05D007911 ORTHO05D009536 9.7e-22 109.4 325 32.9
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.2e-21 108.2 173 37.6
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 2.2e-21 108.2 129 43.4
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 3.7e-21 107.5 657 25.1
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.8e-20 105.1 189 34.4
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 1.5e-19 102.1 582 25.1
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 2.0e-19 101.7 161 41.0
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 1.0e-18 99.4 162 38.9
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 5.0e-18 97.1 633 23.5
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 6.5e-18 96.7 618 24.3
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 1.4e-17 95.5 145 37.9
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 2.5e-17 94.7 177 33.3
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 3.2e-17 94.4 135 38.5
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 9.4e-17 92.8 124 38.7
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.2e-16 92.4 389 26.5
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.6e-16 92.0 162 38.3
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 3.6e-16 90.9 397 29.0
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 2.3e-15 88.2 106 44.3
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 6.7e-15 86.7 593 22.4
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 4.4e-14 84.0 203 29.1
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.3e-13 82.4 370 27.0
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.3e-13 82.4 200 31.0
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.7e-13 82.0 622 24.1
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 6.3e-13 80.1 577 23.9
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 1.8e-12 78.6 279 30.8
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.1e-12 77.8 585 23.9
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 3.4e-11 74.3 167 34.7
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 5.9e-11 73.6 581 21.3
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 3.8e-10 70.9 605 23.6
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 5.0e-10 70.5 236 30.5
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 1.8e-07 62.0 61 47.5
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 1.8e-07 62.0 85 40.0
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 5.7e-06 57.0 177 29.9
Aa31LG1G23600 Aethionema arabicum HOM05D012091 ORTHO05D013971 7.4e-06 56.6 70 45.7
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 9.7e-06 56.2 74 40.5


User provided reference genes

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