Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 0.0e+00 1300.8 689 100.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 6.7e-216 754.6 698 61.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.5e-215 753.4 697 63.7
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 5.0e-211 738.4 701 62.5
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.3e-208 729.6 648 61.3
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.5e-207 726.9 708 59.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.2e-206 723.0 693 61.3
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 4.5e-204 715.3 694 60.8
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 7.7e-204 714.5 696 59.5
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 3.6e-201 705.7 681 59.3
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.4e-200 703.7 681 59.8
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 4.3e-199 698.7 688 58.6
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.8e-198 696.0 688 58.6
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 8.2e-198 694.5 688 58.9
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.8e-197 693.3 694 60.2
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.6e-196 689.5 704 59.7
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.6e-196 689.5 704 59.7
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.0e-195 687.6 688 59.6
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.2e-195 686.4 672 59.4
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.5e-195 684.9 664 59.5
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.2e-194 682.2 667 59.4
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 7.2e-194 681.4 700 57.7
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.1e-193 679.9 659 59.3
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.1e-193 679.9 668 59.4
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.8e-192 676.8 690 58.0
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 5.2e-192 675.2 656 59.6
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.3e-191 672.5 722 55.3
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.3e-191 672.5 726 55.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.2e-188 664.1 705 57.9
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.5e-188 662.1 697 58.2
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.2e-186 656.0 690 58.1
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 8.8e-184 647.9 686 55.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.2e-183 647.5 708 56.2
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 7.5e-183 644.8 736 53.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 7.5e-183 644.8 677 57.0
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.2e-182 643.3 710 54.5
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.2e-182 643.3 689 56.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.8e-181 640.2 719 55.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 3.1e-181 639.4 711 55.1
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.2e-180 637.5 712 54.5
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 5.9e-180 635.2 708 56.1
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.0e-179 634.4 713 53.9
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.8e-179 632.5 688 54.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 9.4e-178 627.9 710 54.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.7e-177 626.3 694 53.7
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 2.7e-177 626.3 677 56.1
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.7e-174 617.1 700 54.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 2.4e-173 613.2 724 53.3
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 3.1e-173 612.8 707 53.0
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 1.2e-172 610.9 708 51.8
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.5e-170 601.3 603 56.2
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 8.0e-169 598.2 638 55.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 4.4e-167 592.4 610 56.9
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 5.7e-167 592.0 622 56.8
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.8e-167 591.3 603 55.9
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.7e-166 590.5 679 53.2
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 2.0e-164 583.6 688 53.9
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.6e-163 578.6 692 51.4
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.1e-162 577.8 691 50.7
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-162 577.0 698 51.7
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 5.2e-160 568.9 709 49.4
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.7e-159 565.5 669 50.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 7.5e-159 565.1 682 51.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.1e-157 561.2 685 50.7
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.0e-156 557.0 693 51.1
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.3e-155 554.3 697 50.1
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.3e-155 553.5 695 49.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 7.3e-154 548.5 695 48.8
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 8.0e-153 545.0 659 51.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 2.3e-152 543.5 779 44.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 6.8e-152 542.0 548 59.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.9e-147 526.2 665 51.6
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 6.6e-147 525.4 572 55.1
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.6e-145 520.8 568 53.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.8e-145 520.0 694 49.6
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.3e-142 511.1 705 49.6
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.9e-142 510.0 726 46.3
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 6.4e-142 508.8 627 51.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 4.1e-141 506.1 597 51.6
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.2e-140 504.6 597 51.6
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 2.7e-140 503.4 652 50.0
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.5e-138 496.9 716 49.0
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.3e-138 496.5 611 49.4
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.2e-137 494.6 644 49.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 4.1e-133 479.6 694 46.8
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.4e-128 463.8 671 45.2
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 4.4e-127 459.5 670 47.2
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 6.4e-126 455.7 663 46.8
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.1e-122 444.9 693 44.3
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 4.3e-122 443.0 664 45.6
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 4.0e-120 436.4 706 45.3
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 5.3e-120 436.0 645 46.0
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 9.3e-117 425.2 695 44.7
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.8e-115 421.0 610 43.8
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.0e-115 420.2 618 46.3
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 3.0e-115 420.2 688 42.3
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 4.8e-113 412.9 671 44.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 4.8e-113 412.9 671 44.6
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.2e-111 408.3 631 45.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.7e-110 404.4 696 43.0
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 7.1e-109 399.1 525 48.4
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 3.5e-108 396.7 437 56.8
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.5e-106 391.3 500 51.4
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.5e-106 390.6 693 42.0
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 5.6e-106 389.4 565 47.6
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 5.6e-106 389.4 513 48.0
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-103 381.7 590 44.4
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 7.6e-103 379.0 629 43.2
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.4e-101 374.8 720 39.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.5e-101 374.0 673 42.2
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 2.3e-99 367.5 524 46.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 4.8e-89 333.2 542 43.4
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.5e-87 328.2 287 62.4
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 7.2e-85 319.3 603 42.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 7.7e-79 299.3 500 43.2
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 5.0e-78 296.6 189 77.2
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.7e-73 281.6 264 57.6
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 8.0e-60 236.1 202 56.4
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 2.2e-57 228.0 165 72.7
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.5e-53 214.5 342 40.1
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 5.2e-51 206.8 246 47.6
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.5e-45 188.7 149 66.4
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 1.9e-45 188.3 200 56.5
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.4e-43 182.2 461 33.6
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 9.8e-42 176.0 121 70.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 3.7e-41 174.1 201 43.3
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.9e-41 173.7 124 71.8
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.8e-40 171.8 265 45.7
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.7e-38 165.2 229 45.9
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-37 162.5 156 55.8
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 8.9e-35 152.9 155 54.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.8e-34 150.2 145 55.2
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 4.1e-32 144.1 371 34.5
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 7.0e-32 143.3 130 59.2
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 5.4e-24 117.1 87 66.7
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.5e-23 114.4 77 63.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.6e-22 109.8 172 45.9
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 9.9e-18 96.3 351 27.9
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.7e-17 95.5 116 50.0
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 6.4e-17 93.6 73 61.6
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.8e-15 86.7 72 58.3
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 5.1e-14 84.0 62 67.7
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 3.1e-11 74.7 65 58.5
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 5.2e-11 73.9 128 41.4
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-10 72.0 126 42.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 8.4e-09 66.6 40 75.0
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.9e-08 65.5 53 60.4
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.2e-07 62.8 244 24.6
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 2.7e-07 61.6 53 54.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 3.5e-07 61.2 54 63.0
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 6.0e-07 60.5 28 96.4


User provided reference genes

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