Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.5e-131 472.2 263 100.0
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 6.9e-105 384.4 264 79.9
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.9e-55 219.2 267 53.6
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.5e-54 214.5 267 53.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 9.5e-54 214.5 269 52.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 6.8e-52 208.4 266 51.9
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.2e-51 207.6 264 52.3
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.9e-50 203.0 270 51.9
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.4e-49 199.9 268 50.7
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.2e-49 199.5 271 51.3
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.6e-48 197.2 269 50.2
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.7e-48 196.4 266 49.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-48 196.1 270 51.9
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.9e-47 192.6 271 48.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 6.6e-47 191.8 242 53.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.5e-46 190.7 269 49.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 3.3e-46 189.5 279 47.0
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.6e-46 188.7 264 48.1
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.2e-45 187.6 288 46.2
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.1e-45 186.8 279 49.1
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.1e-44 184.5 265 50.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.3e-44 183.3 267 47.9
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.8e-44 181.8 264 48.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.2e-43 181.0 272 47.4
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.5e-43 180.6 294 46.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.4e-43 179.5 267 46.8
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 5.8e-43 178.7 280 44.6
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.8e-43 178.7 277 47.3
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.3e-42 177.6 270 45.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.7e-42 177.2 239 51.5
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.2e-42 176.8 265 47.9
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.9e-42 176.4 272 46.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 4.9e-42 175.6 273 47.6
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 8.3e-42 174.9 277 45.1
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.3e-42 174.9 269 48.0
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 8.3e-42 174.9 276 47.5
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.2e-41 172.9 278 45.3
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 3.2e-41 172.9 283 43.1
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.1e-41 171.8 265 45.7
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 9.2e-41 171.4 274 45.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.6e-40 170.6 267 49.1
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.5e-40 169.5 274 45.3
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 4.6e-40 169.1 266 47.0
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 6.0e-40 168.7 276 45.3
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 6.0e-40 168.7 268 45.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.3e-39 167.5 284 43.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.3e-39 167.5 274 45.3
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 3.0e-39 166.4 274 45.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 3.9e-39 166.0 271 43.5
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 5.1e-39 165.6 269 44.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 6.6e-39 165.2 318 43.1
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.6e-39 164.9 271 44.3
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-38 164.5 269 48.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.1e-38 164.5 270 47.4
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.5e-38 164.1 282 44.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 5.6e-38 162.2 241 46.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 7.3e-38 161.8 266 44.4
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 9.5e-38 161.4 270 47.0
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-37 161.0 267 44.2
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-37 160.2 263 45.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-37 160.2 263 45.2
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-37 159.8 263 44.9
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-37 159.8 263 44.9
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.6e-37 159.5 267 43.8
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.7e-37 159.1 273 45.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 6.2e-37 158.7 273 43.2
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 8.1e-37 158.3 270 41.5
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 8.1e-37 158.3 273 43.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.1e-36 157.9 270 46.3
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.4e-36 157.5 283 42.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.8e-36 157.1 171 57.9
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.2e-36 155.6 274 44.9
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 5.2e-36 155.6 263 44.5
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.2e-36 155.6 276 44.2
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.2e-35 154.5 266 47.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.0e-35 153.7 280 43.6
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 2.6e-35 153.3 276 42.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-35 153.3 276 42.4
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.6e-35 153.3 265 44.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.4e-35 152.9 276 43.5
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 9.9e-35 151.4 269 44.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.3e-34 151.0 267 42.3
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.3e-34 151.0 272 44.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.3e-34 151.0 255 45.9
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.7e-34 150.6 272 44.9
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.2e-34 150.2 281 42.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.2e-34 150.2 276 42.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.9e-34 149.8 278 44.2
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.9e-34 149.8 203 48.8
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-34 149.4 236 46.2
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 6.4e-34 148.7 273 40.7
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 8.4e-34 148.3 264 43.9
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 8.4e-34 148.3 264 43.6
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 8.4e-34 148.3 280 42.9
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-33 147.9 248 46.4
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.2e-33 146.4 225 49.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.1e-32 143.7 272 44.1
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.1e-32 143.7 206 48.5
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.5e-32 142.9 274 41.2
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-32 142.9 269 41.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 4.6e-32 142.5 219 42.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.8e-32 141.7 275 45.1
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 7.8e-32 141.7 279 41.2
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 7.8e-32 141.7 279 40.1
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-31 141.4 276 41.3
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.3e-31 141.0 279 39.8
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 6.6e-31 138.7 274 41.2
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.6e-31 138.7 250 45.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 6.6e-31 138.7 255 44.3
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 6.6e-31 138.7 276 40.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 6.6e-31 138.7 266 42.5
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-30 137.5 270 40.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 5.6e-30 135.6 273 40.7
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.6e-30 135.6 264 39.4
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.6e-29 134.0 268 41.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 1.6e-29 134.0 266 42.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 4.7e-29 132.5 316 37.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 6.2e-29 132.1 263 38.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.4e-28 130.2 271 37.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-27 127.9 271 39.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-27 127.9 271 39.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.2e-27 127.9 271 38.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.2e-27 127.9 265 40.8
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.6e-27 126.7 170 50.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.4e-27 126.3 271 39.9
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.4e-27 126.3 271 39.9
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 4.4e-27 125.9 271 39.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.9e-26 122.5 266 39.8
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 6.4e-26 122.1 264 39.0
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-25 121.3 210 43.3
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.4e-25 120.9 244 41.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-25 120.6 232 37.9
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 5.4e-25 119.0 263 40.7
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 9.3e-25 118.2 234 37.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.6e-24 117.5 269 40.1
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.7e-24 116.7 158 49.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-23 114.4 258 39.1
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.3e-23 113.6 276 39.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 8.7e-23 111.7 222 41.0
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 7.3e-22 108.6 175 42.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.3e-21 107.8 173 45.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.8e-21 105.9 272 36.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.4e-20 103.6 179 44.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.1e-20 103.2 240 35.4
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 4.0e-20 102.8 262 35.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.0e-20 102.8 259 36.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-19 100.5 242 38.0
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 5.8e-19 99.0 282 34.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 9.9e-19 98.2 281 34.9
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.9e-18 96.7 225 37.3
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 6.4e-18 95.5 208 35.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.9e-17 94.0 234 34.6
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.9e-17 94.0 273 35.5
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.6e-16 90.9 275 33.5
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.1e-16 90.5 259 30.5
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 7.9e-16 88.6 120 45.8
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.9e-14 84.0 162 40.7
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.5e-14 83.6 263 31.6
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.5e-14 83.6 117 48.7
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.1e-13 80.5 263 30.8
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.8e-13 80.1 271 32.8
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.7e-13 79.7 265 31.7
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 6.2e-13 79.0 119 44.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.0e-12 76.3 158 40.5
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 5.3e-12 75.9 151 38.4
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.5e-11 74.3 165 38.2
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.5e-11 72.8 67 62.7
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 2.2e-10 70.5 154 33.8
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 2.9e-10 70.1 218 33.9
FAN18G3548 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.4e-10 68.9 69 53.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 8.4e-10 68.6 237 32.5
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 1.1e-09 68.2 69 52.2
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.1e-09 68.2 248 29.8
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 1.4e-09 67.8 154 35.7
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 2.4e-09 67.0 127 39.4
FAN05G3047 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.2e-09 66.2 113 41.6
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-09 65.5 141 36.2
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 9.3e-09 65.1 137 37.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-08 64.7 166 38.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.0e-07 61.6 102 44.1
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.9e-06 57.4 44 68.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.9e-06 57.4 150 31.3
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.3e-06 56.6 78 47.4
FvH4_3g36584 Fragaria vesca HOM05D003503 ORTHO05D003885 3.3e-06 56.6 36 69.4
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 7.4e-06 55.5 179 29.6
ATR0605G284 Amborella trichopoda HOM05D020767 ORTHO05D003885 9.6e-06 55.1 83 45.8


User provided reference genes

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