Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 4300.7 2443 100.0
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 3541.5 2446 81.6
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 3403.6 2448 79.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2396.3 2520 60.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2369.3 2533 59.4
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2344.3 2502 59.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2316.6 2501 58.4
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2280.4 2505 57.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2280.4 2531 57.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2267.7 2500 57.7
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2263.8 2501 56.8
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2255.3 2504 57.5
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2229.1 2490 57.6
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2217.2 2490 56.8
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2216.8 2494 57.5
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2210.3 2535 56.5
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2198.7 2505 56.2
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2191.4 2560 56.0
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2184.5 2512 56.3
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2174.1 2562 55.7
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2165.6 2501 56.1
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2157.5 2494 55.9
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2157.5 2555 55.6
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2155.9 2562 55.6
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2146.7 2499 54.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2119.0 2504 54.5
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2118.6 2500 54.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2115.5 2457 56.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2103.9 2492 56.1
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2097.0 2493 54.4
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2041.2 2543 52.9
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2014.6 2508 52.8
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1998.0 2509 52.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1989.5 2509 52.7
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1961.0 2500 52.1
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1948.3 2489 52.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1933.3 2496 51.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1899.8 2522 52.4
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1895.6 2536 50.7
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1882.5 2493 52.1
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1881.3 2185 55.7
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1872.8 2522 51.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1863.6 2525 50.8
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1862.4 2490 50.7
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1860.5 2474 51.3
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1858.6 2525 50.5
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1841.2 2517 49.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1823.5 2503 50.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1821.2 2502 50.5
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1811.2 2486 51.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1800.4 2497 50.1
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1800.0 2304 53.6
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1777.7 2501 50.2
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1768.4 2506 50.3
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1765.0 2476 49.7
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1762.7 2514 49.0
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1761.5 2509 48.3
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1756.5 2520 50.6
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1742.2 2483 49.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1733.8 2028 56.1
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1733.0 2483 48.9
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1732.6 2507 47.6
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1729.5 2517 47.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1722.2 2535 48.1
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1721.8 2506 48.8
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1719.1 2556 48.4
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1716.8 2556 47.7
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1712.2 2492 49.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1685.2 2498 48.1
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1680.6 2639 45.7
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1668.3 2483 47.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1650.2 2491 46.4
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1636.7 1866 57.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1626.3 2393 48.1
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1596.3 2511 47.9
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1594.3 2482 47.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1560.4 2439 44.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1539.2 2487 47.4
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1527.3 2503 46.3
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1524.2 2492 45.9
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1498.4 2396 44.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1473.4 2486 44.3
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1472.6 2501 44.5
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1445.3 2612 42.6
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1413.3 2602 42.2
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1387.5 2518 42.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1382.1 2492 42.4
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1345.1 2473 44.2
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1343.2 2527 42.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1299.3 2518 42.6
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1296.6 2483 42.5
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1290.4 2488 42.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1276.5 2475 41.7
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1271.9 2432 43.2
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1241.1 2597 41.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1213.4 2427 42.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1194.5 2466 40.2
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1175.2 2405 40.2
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1125.5 1738 46.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1110.1 2383 40.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1106.7 1700 47.8
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1106.3 2517 38.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1088.6 1289 53.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.6e-296 1024.2 1044 60.8
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-286 991.1 961 59.7
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 3.7e-245 853.6 2513 36.1
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 7.3e-241 839.3 2412 36.7
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.4e-239 835.1 2730 35.2
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.2e-237 827.8 1011 57.3
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.7e-226 791.6 2443 36.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.3e-224 785.4 2454 36.3
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.7e-221 775.0 2436 36.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.7e-221 775.0 2436 36.0
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 7.4e-217 759.6 2475 35.6
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.1e-207 729.2 688 61.2
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.8e-199 701.8 967 50.5
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.5e-198 697.2 939 51.5
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.9e-188 665.2 2556 31.9
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.2e-176 625.2 1934 35.7
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.6e-174 619.0 571 67.1
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.9e-164 585.5 1798 31.8
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 6.8e-154 550.4 1743 34.5
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.4e-129 468.4 452 58.4
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.7e-128 466.1 506 54.9
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.5e-124 453.0 714 44.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 8.4e-120 437.2 1314 35.2
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.9e-116 426.0 675 47.3
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 8.1e-115 420.6 933 36.3
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 4.9e-104 384.8 2893 27.9
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.6e-100 370.5 1246 31.9
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.7e-84 317.4 2677 29.3
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 5.7e-76 291.6 965 31.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 4.5e-73 282.0 299 53.2
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.8e-67 261.9 1030 33.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.1e-55 224.2 252 54.8
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.7e-54 219.5 2666 27.9
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.7e-54 218.8 252 54.0
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 5.0e-48 198.7 566 33.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 7.2e-47 194.9 545 36.0
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-46 194.1 2631 26.8
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.6e-46 192.6 440 34.3
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.0e-45 191.0 226 54.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.6e-44 186.4 496 37.3
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 9.5e-39 167.9 2401 25.6
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 5.9e-33 148.7 313 37.4
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 4.1e-26 125.9 191 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.0e-24 121.3 1894 26.0
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-24 120.9 272 34.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.5e-23 117.5 174 48.9
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 7.3e-23 115.2 252 40.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 5.8e-20 105.5 313 30.7
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 2.1e-14 87.0 74 62.2
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.8e-14 86.7 62 71.0
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.8e-14 86.7 62 71.0
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.6e-14 86.3 206 36.4
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.9e-10 73.9 102 45.1
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.2e-09 71.2 116 40.5
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 6.6e-08 65.5 126 39.7
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 6.2e-06 58.9 173 32.9


User provided reference genes

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