Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 0.0e+00 1144.8 595 100.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.9e-276 954.9 592 84.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 5.5e-275 950.7 607 82.5
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 8.8e-273 943.3 601 82.4
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 3.7e-271 937.9 598 82.4
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.7e-271 937.9 592 83.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 8.2e-271 936.8 596 82.4
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.8e-270 935.6 594 82.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.1e-270 934.9 597 81.7
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 4.5e-269 931.0 586 82.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.5e-269 931.0 598 80.9
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.7e-268 929.1 597 81.1
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.4e-267 926.0 592 81.9
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.9e-267 925.6 591 82.1
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.5e-267 925.2 597 80.6
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 5.5e-267 924.1 598 81.1
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-266 922.9 592 81.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.6e-266 922.5 592 81.6
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.6e-266 922.5 597 79.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.1e-266 922.2 602 80.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 6.1e-266 920.6 600 81.2
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.0e-265 919.8 598 80.6
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.0e-265 919.8 597 80.7
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.0e-265 919.8 597 79.7
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.0e-265 919.8 597 80.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.9e-265 917.9 589 81.3
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 3.9e-265 917.9 590 80.8
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.4e-264 914.4 597 80.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 7.4e-264 913.7 589 81.3
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.4e-264 913.7 597 80.1
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.7e-263 912.5 585 81.0
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.2e-263 912.1 597 80.4
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.8e-263 911.8 573 81.7
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.7e-263 911.4 589 80.6
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.1e-262 908.3 597 80.7
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 5.3e-262 907.5 637 75.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.0e-262 907.1 591 79.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 9.1e-262 906.7 597 80.2
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.1e-262 906.7 597 80.2
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-261 906.0 589 80.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.6e-261 905.2 593 79.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.6e-261 905.2 598 80.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-261 904.4 588 81.0
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 5.9e-261 904.0 589 80.8
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.9e-261 904.0 588 80.8
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 7.7e-261 903.7 590 80.2
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.0e-260 903.3 582 80.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.9e-260 901.7 590 81.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.5e-260 900.6 590 80.5
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 8.5e-260 900.2 597 79.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 7.2e-259 897.1 597 78.1
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.8e-257 892.5 593 78.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.0e-257 891.7 597 78.6
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.1e-256 889.8 596 77.7
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 9.7e-256 886.7 596 78.0
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.8e-255 885.2 596 78.0
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.4e-254 882.9 702 68.2
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.1e-254 881.7 565 81.9
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 4.1e-254 881.3 596 76.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-253 879.8 596 77.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 5.9e-253 877.5 596 77.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 7.7e-253 877.1 699 69.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.0e-252 876.7 596 76.8
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.3e-252 876.3 582 78.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.2e-252 875.5 594 76.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-252 875.5 597 77.2
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.9e-252 875.2 597 77.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-251 873.2 583 78.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.9e-251 872.5 591 76.8
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.2e-251 871.3 596 76.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.2e-251 871.3 596 76.7
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-250 869.8 592 76.7
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 3.6e-250 868.2 596 76.7
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.8e-249 865.9 593 77.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 8.8e-249 863.6 597 75.4
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.0e-248 862.4 575 77.2
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 3.4e-248 861.7 597 76.2
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 3.4e-248 861.7 598 75.8
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.5e-248 860.5 597 75.7
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 9.7e-248 860.1 587 76.7
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 9.7e-248 860.1 602 74.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 3.7e-247 858.2 597 75.5
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 6.3e-247 857.4 590 76.1
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.8e-246 855.9 596 75.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 2.4e-246 855.5 598 75.3
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.1e-246 855.1 590 76.1
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-246 854.0 596 76.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.2e-245 853.2 564 78.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.5e-245 851.3 596 75.0
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.5e-245 851.3 590 75.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-244 849.4 596 75.3
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.7e-244 849.4 569 78.6
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.9e-244 848.6 508 85.6
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-242 843.2 592 77.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.0e-241 840.1 618 73.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.0e-241 840.1 590 75.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.8e-241 839.3 598 73.9
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.0e-241 838.6 588 75.7
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 4.0e-241 838.2 594 73.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.0e-240 835.9 597 73.7
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.8e-239 831.2 592 74.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 6.3e-239 830.9 592 75.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 9.1e-238 827.0 592 72.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 5.9e-237 824.3 592 72.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.8e-234 815.5 593 72.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.4e-233 813.1 590 73.1
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.6e-232 808.9 592 70.8
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 7.5e-232 807.4 590 72.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.7e-231 805.1 511 80.2
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.7e-231 805.1 593 72.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.4e-230 801.2 603 72.5
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.0e-229 799.3 590 71.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.3e-217 759.2 595 69.1
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 8.3e-215 750.7 549 70.7
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.1e-214 748.4 579 68.4
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.1e-214 748.4 601 67.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.2e-213 746.9 575 69.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 6.4e-207 724.5 602 65.4
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.2e-206 722.2 610 65.6
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.0e-200 703.0 522 70.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 4.2e-190 668.7 501 71.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 8.1e-186 654.4 433 79.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.5e-181 639.0 448 74.3
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.5e-179 633.6 478 69.2
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 5.8e-176 621.7 507 68.4
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.2e-165 587.4 527 61.1
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.0e-164 582.8 382 81.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 2.3e-156 556.6 373 76.9
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.6e-149 532.7 582 57.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 5.9e-144 515.4 524 54.0
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-136 490.3 400 67.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.6e-131 473.4 322 77.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.5e-118 431.0 309 74.1
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 9.5e-118 428.3 252 87.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 8.3e-114 415.2 510 49.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 8.9e-100 368.6 556 41.5
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-96 358.2 230 79.1
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.3e-92 344.0 229 79.9
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-82 309.7 223 72.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.3e-76 289.7 211 69.7
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.7e-64 250.8 269 51.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.4e-59 233.8 316 41.1
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.0e-47 195.7 114 86.0
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.5e-46 191.8 268 44.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.9e-39 167.2 127 69.3
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-30 138.3 137 57.7
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.6e-27 127.9 186 46.8
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 6.1e-24 116.7 106 63.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.8e-23 115.2 205 42.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.4e-20 105.5 109 56.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 9.1e-20 102.8 83 63.9
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-16 92.4 50 86.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.7e-13 82.0 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.4e-12 77.0 60 65.0
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.7e-11 74.7 73 54.8
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 3.5e-11 74.3 62 59.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.2e-10 71.6 73 53.4
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.2e-09 67.4 121 38.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 9.5e-09 66.2 57 57.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 8.8e-07 59.7 99 42.4
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.0e-06 58.5 57 45.6


User provided reference genes

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