Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.9e-185 651.0 327 100.0
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.5e-122 441.8 257 84.4
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.8e-102 376.7 324 61.7
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-99 367.5 311 63.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.7e-97 360.1 321 61.1
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 6.6e-97 358.2 312 61.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.2e-95 354.0 293 62.8
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.8e-95 352.8 276 65.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.2e-90 337.4 297 58.9
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.5e-90 335.9 315 58.7
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.1e-89 332.0 287 58.9
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.6e-89 331.6 240 68.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.5e-88 330.5 317 55.5
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.1e-87 324.7 323 54.5
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 7.8e-82 308.1 270 55.2
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.0e-81 306.2 300 52.0
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.1e-80 304.3 330 49.7
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.9e-80 303.5 286 53.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.3e-80 302.8 283 51.9
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 4.3e-80 302.4 319 50.5
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 4.3e-80 302.4 315 51.4
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.3e-79 300.8 303 50.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.2e-79 298.5 302 50.3
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.1e-78 297.7 288 52.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.4e-78 296.6 269 53.9
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.0e-78 294.7 303 48.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 9.0e-78 294.7 328 48.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 9.0e-78 294.7 313 49.2
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.2e-77 294.3 312 50.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.5e-77 292.4 272 53.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 5.8e-77 292.0 272 52.9
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.7e-76 290.4 299 50.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.2e-76 290.0 275 53.1
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.9e-76 289.7 272 52.9
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 3.8e-76 289.3 313 50.8
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 302 49.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.9e-75 287.0 309 47.2
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.4e-75 285.4 301 48.5
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.2e-74 284.3 327 48.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.5e-74 282.7 303 48.2
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 3.5e-74 282.7 301 46.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.0e-73 281.2 320 45.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.3e-73 280.8 325 46.5
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.8e-73 280.4 318 45.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.3e-73 280.0 301 50.5
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.9e-73 279.3 315 48.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.9e-73 279.3 315 48.3
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.1e-73 278.9 318 46.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.5e-72 276.6 268 49.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.5e-72 276.6 313 46.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.3e-72 276.2 299 50.2
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 7.4e-72 275.0 309 46.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 9.6e-72 274.6 272 50.7
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 9.6e-72 274.6 308 48.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 9.6e-72 274.6 327 46.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.3e-71 274.2 269 50.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.1e-71 273.5 282 48.9
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.8e-71 273.1 297 47.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 3.7e-71 272.7 270 51.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.1e-70 271.2 270 52.6
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.4e-70 270.8 271 49.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.4e-70 270.0 296 47.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.1e-70 269.6 264 51.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.1e-70 269.6 293 49.5
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 5.3e-70 268.9 296 48.6
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.5e-69 267.3 325 47.1
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.0e-69 266.9 293 47.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 2.0e-69 266.9 274 48.9
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-69 266.9 273 49.1
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.6e-69 266.5 318 45.9
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.6e-69 266.5 308 45.5
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.6e-69 265.0 273 49.8
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.7e-68 263.8 270 49.3
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.2e-68 263.5 273 48.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.9e-68 263.1 286 46.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.9e-68 263.1 271 48.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.9e-68 263.1 272 46.7
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.9e-68 263.1 310 48.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.8e-68 262.7 283 49.5
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.9e-68 262.3 288 45.1
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.5e-68 261.9 321 43.3
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 8.4e-68 261.5 272 46.3
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.1e-67 261.2 327 44.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.4e-67 260.8 318 45.6
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-67 260.8 325 44.9
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-67 260.4 284 47.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 4.2e-67 259.2 291 46.7
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 7.1e-67 258.5 294 47.6
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.2e-66 257.7 303 45.5
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-66 257.7 308 44.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-66 257.3 312 44.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-66 257.3 284 47.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.1e-66 256.9 293 45.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.0e-65 254.6 320 44.1
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.3e-65 254.2 270 48.1
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.9e-65 252.7 301 45.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 8.7e-65 251.5 300 45.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.1e-64 251.1 271 46.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-64 251.1 274 46.4
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.9e-64 250.4 271 47.2
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.7e-64 248.8 310 44.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 7.4e-64 248.4 296 43.6
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.8e-63 245.7 276 44.9
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.8e-62 243.8 277 47.3
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-62 241.9 274 45.3
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 6.9e-62 241.9 273 44.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.2e-61 241.1 268 47.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 7.6e-61 238.4 318 41.2
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.3e-60 237.7 271 43.9
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.3e-60 237.7 308 42.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.8e-60 236.1 321 40.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.2e-59 233.0 271 43.9
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.1e-58 230.3 272 44.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.6e-58 229.2 305 41.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.7e-57 225.3 274 39.8
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 7.4e-56 221.9 251 49.4
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.6e-53 213.4 289 41.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.5e-51 206.8 270 42.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.2e-51 206.5 296 38.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.7e-50 203.4 297 37.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.6e-50 202.6 201 54.2
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.8e-49 198.4 206 49.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.8e-49 198.4 206 49.5
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.5e-48 196.8 266 38.3
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.3e-48 196.1 302 35.4
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.2e-47 193.7 207 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.8e-46 190.7 263 40.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 5.3e-46 189.1 262 38.9
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 9.1e-46 188.3 318 35.5
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 6.5e-44 182.2 194 49.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.6e-42 177.6 275 37.5
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.1e-42 177.2 261 37.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.8e-39 166.8 264 34.8
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.8e-39 166.8 173 46.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-37 161.0 267 33.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.7e-34 150.2 180 43.9
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.0e-28 129.4 206 35.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.1e-19 101.7 99 55.6
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.1e-18 95.9 122 41.8
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.4e-17 94.7 228 28.1
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.4e-16 90.1 204 29.4
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 4.4e-16 89.7 309 25.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-15 88.2 135 36.3
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-15 86.7 110 45.5
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-15 86.7 110 45.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.4e-14 84.7 206 27.7
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 6.6e-12 75.9 102 39.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 5.6e-11 72.8 95 37.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-09 68.6 87 39.1


User provided reference genes

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