Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 4.6e-188 661.0 314 100.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 4.8e-129 464.9 317 69.7
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 4.1e-128 461.8 319 68.7
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 7.2e-125 451.1 319 68.3
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.6e-124 449.9 315 67.9
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 2.7e-124 449.1 315 67.9
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.3e-123 446.0 315 67.9
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 2.2e-121 439.5 320 68.1
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.2e-121 439.5 315 66.0
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 3.7e-121 438.7 322 66.5
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 6.3e-121 438.0 354 61.9
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.6e-119 433.3 314 66.9
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 2.0e-119 433.0 313 67.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 3.5e-119 432.2 319 65.8
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 5.9e-119 431.4 317 65.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.0e-118 430.6 316 67.7
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.3e-118 430.3 313 67.1
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.7e-118 429.9 313 66.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.2e-118 429.5 315 64.8
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 3.2e-117 425.6 313 66.5
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.2e-117 425.2 313 66.5
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.7e-116 422.5 318 63.2
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 8.0e-116 421.0 332 62.7
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 3.0e-115 419.1 318 61.9
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 5.2e-115 418.3 314 63.7
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.2e-115 418.3 314 62.7
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 8.8e-115 417.5 313 65.2
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.2e-114 417.2 312 63.1
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 9.8e-114 414.1 317 63.7
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.3e-113 413.7 315 66.0
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.7e-113 413.3 314 65.6
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.2e-113 412.9 315 66.3
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.8e-113 412.5 314 63.7
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.8e-113 412.5 316 61.1
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 3.7e-113 412.1 312 62.5
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 4.8e-113 411.8 323 62.8
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 6.3e-113 411.4 317 61.8
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.1e-112 410.6 315 63.2
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.4e-112 410.2 312 62.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 4.1e-112 408.7 316 62.0
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 7.0e-112 407.9 312 62.8
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 7.0e-112 407.9 315 61.3
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.6e-111 406.8 317 61.2
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 2.7e-111 406.0 317 61.2
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 3.5e-111 405.6 312 62.5
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 5.9e-111 404.8 317 61.2
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 7.7e-111 404.4 313 62.0
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.0e-110 404.1 314 61.8
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.2e-110 402.9 317 61.8
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 2.9e-110 402.5 312 61.9
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.9e-110 402.5 315 61.9
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 3.8e-110 402.1 315 61.9
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 5.0e-110 401.7 312 61.9
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 6.5e-110 401.4 318 62.9
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-109 400.6 312 61.9
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.1e-109 400.6 320 60.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 2.5e-109 399.4 312 62.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 3.2e-109 399.1 312 61.9
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 4.2e-109 398.7 315 60.6
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 7.2e-109 397.9 320 62.2
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.2e-108 397.1 315 61.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.7e-108 396.0 320 61.9
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.7e-108 395.2 317 59.9
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-107 393.7 315 60.3
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.8e-107 393.3 316 62.0
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.8e-107 393.3 312 63.1
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.0e-106 389.8 314 60.5
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.4e-106 389.0 271 70.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 9.8e-106 387.5 318 61.3
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 6.3e-105 384.8 328 59.1
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 8.3e-105 384.4 320 58.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 8.3e-105 384.4 363 54.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 5.4e-104 381.7 324 59.6
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 7.0e-104 381.3 317 58.7
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 4.5e-103 378.6 315 61.0
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 4.5e-103 378.6 323 59.4
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.0e-102 377.5 316 59.8
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 8.6e-102 374.4 314 56.1
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.3e-101 372.1 290 59.7
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.8e-99 366.7 313 59.1
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 2.6e-98 362.8 237 74.3
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 3.5e-95 352.4 252 67.1
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.8e-92 342.8 313 56.5
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.8e-92 342.8 316 53.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.4e-91 340.5 240 66.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 9.8e-90 334.3 329 53.2
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.3e-89 334.0 319 54.5
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 3.2e-88 329.3 321 53.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 4.1e-88 328.9 236 68.6
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 2.0e-87 326.6 236 67.4
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.7e-87 326.2 326 54.3
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.0e-86 324.3 333 50.5
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 2.3e-83 313.2 317 54.3
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.9e-81 306.2 313 52.4
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.1e-79 300.1 307 50.2
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.6e-77 292.0 317 47.0
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 3.6e-76 289.3 217 62.7
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 2.0e-74 283.5 248 59.7
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 4.4e-74 282.3 307 47.2
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 4.4e-74 282.3 323 49.5
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.2e-72 276.2 249 52.6
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 2.7e-71 273.1 209 62.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.3e-70 270.0 174 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.5e-69 267.3 239 56.9
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 5.6e-69 265.4 275 52.0
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.6e-68 263.8 324 46.9
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 3.9e-62 242.7 156 69.2
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.5e-61 240.7 172 70.3
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 8.1e-60 235.0 174 66.7
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.7e-57 227.3 225 49.8
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 9.6e-53 211.5 162 64.2
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.1e-51 206.5 315 38.7
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.9e-48 197.2 142 62.7
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 7.1e-48 195.3 129 69.0
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-43 181.4 223 43.9
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.1e-43 181.4 143 64.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 7.1e-40 168.7 323 35.3
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 2.1e-39 167.2 234 41.5
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 3.9e-38 162.9 144 54.9
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.6e-36 157.5 236 39.4
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 6.3e-36 155.6 115 60.0
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.4e-35 154.5 438 28.5
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.3e-32 141.7 170 45.9
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.7e-20 104.4 64 73.4
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 2.6e-18 97.1 53 79.2
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.3e-17 94.7 67 61.2
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 2.5e-16 90.5 82 47.6
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 1.8e-14 84.3 51 70.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.0e-10 70.9 45 66.7
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.9e-08 64.3 34 85.3
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.5e-08 63.9 36 75.0
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-07 61.6 39 74.4
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 3.6e-07 60.1 36 66.7
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 1.0e-06 58.5 42 61.9


User provided reference genes

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