Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.5e-160 568.5 357 100.0
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 5.5e-89 332.0 381 68.8
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 4.9e-77 292.4 393 55.5
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.8e-71 273.9 398 56.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.0e-71 272.7 386 54.7
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 3.7e-69 266.2 390 52.1
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.5e-67 259.6 383 54.3
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 4.3e-65 252.7 403 51.9
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.2e-64 251.1 401 53.1
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.3e-63 246.9 389 47.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 2.6e-62 243.4 393 49.1
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 2.6e-62 243.4 396 47.2
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.4e-62 243.0 394 50.0
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.4e-62 242.7 400 47.0
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.2e-61 240.4 394 50.3
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 3.7e-61 239.6 395 51.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 4.9e-61 239.2 394 52.5
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.9e-60 237.3 387 50.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.2e-60 236.5 384 48.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.9e-58 229.6 408 50.0
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 6.6e-58 228.8 393 50.6
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 4.3e-57 226.1 412 46.1
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 7.3e-57 225.3 394 49.2
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.2e-56 224.6 394 51.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-56 224.6 399 49.4
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.7e-56 222.6 392 47.7
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 6.2e-56 222.2 404 46.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 8.1e-56 221.9 401 46.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.1e-55 221.5 359 49.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.4e-55 221.1 359 56.0
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.8e-55 220.7 373 53.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.1e-55 219.9 404 44.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 4.0e-55 219.5 389 48.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.0e-55 219.5 395 48.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.0e-55 219.5 382 49.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.2e-55 219.2 363 46.0
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.2e-55 219.2 386 50.8
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.8e-55 218.8 396 49.2
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.9e-55 218.4 416 45.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.2e-54 218.0 384 46.6
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.5e-54 217.6 393 45.8
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 2.6e-54 216.9 386 50.3
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.6e-54 216.9 398 46.5
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.6e-54 215.3 386 46.9
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.7e-53 214.2 380 44.2
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.9e-53 213.4 385 50.1
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 6.4e-53 212.2 331 46.2
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.4e-53 212.2 403 45.2
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.9e-52 210.7 391 49.1
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.9e-52 210.7 382 47.4
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 2.4e-52 210.3 396 45.5
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.4e-52 209.1 394 47.7
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 9.2e-52 208.4 391 46.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 2.1e-51 207.2 383 45.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.5e-51 206.5 405 48.9
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.3e-50 204.5 394 45.9
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.3e-50 204.5 361 46.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.3e-50 204.5 380 48.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 5.1e-50 202.6 380 43.7
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.1e-49 201.4 376 46.3
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.1e-49 201.4 394 47.5
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.5e-49 201.1 394 47.5
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.5e-49 200.3 401 44.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.2e-48 198.0 376 43.9
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 6.2e-48 195.7 390 41.5
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.1e-47 194.9 376 43.1
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.4e-47 194.5 375 45.9
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.1e-47 193.4 392 44.6
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.1e-47 193.4 358 49.2
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.0e-47 193.0 357 48.7
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.2e-47 192.6 399 40.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.9e-47 192.2 385 40.0
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.6e-46 190.3 372 43.0
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.4e-46 189.5 400 42.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 7.6e-46 188.7 388 47.9
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.6e-46 188.7 379 39.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.2e-45 187.2 391 48.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.2e-45 187.2 342 47.7
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 3.8e-45 186.4 380 47.4
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.8e-45 186.4 395 45.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.8e-45 186.4 396 45.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.9e-45 186.0 395 41.5
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 6.4e-45 185.7 380 46.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 8.4e-45 185.3 374 49.5
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.4e-45 185.3 396 47.7
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-44 184.1 395 46.3
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.4e-44 183.7 377 40.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.2e-44 183.3 396 48.2
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.2e-44 183.0 385 39.7
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.2e-44 183.0 379 40.4
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 9.3e-44 181.8 384 44.5
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-43 181.0 375 47.5
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-43 180.3 387 40.1
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.6e-43 179.5 376 42.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 6.0e-43 179.1 381 46.2
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.3e-42 177.9 381 44.1
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.5e-41 174.5 383 44.1
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.6e-41 172.6 368 41.3
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 9.6e-41 171.8 378 41.8
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-40 171.4 326 48.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 3.6e-40 169.9 381 39.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.1e-39 168.3 384 37.5
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.4e-39 167.9 298 45.6
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.8e-39 167.5 357 41.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 5.3e-39 166.0 352 39.8
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.0e-38 164.1 400 38.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.6e-38 163.7 396 38.6
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 4.5e-38 162.9 354 47.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 9.9e-38 161.8 360 41.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.2e-37 160.6 361 45.7
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.4e-37 159.1 374 42.5
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 9.3e-36 155.2 343 46.4
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.7e-35 153.7 399 36.8
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.7e-35 153.7 389 37.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.5e-35 153.3 371 41.5
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-34 151.8 301 40.9
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.8e-34 151.0 319 37.9
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.9e-34 149.8 296 39.9
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 8.7e-34 148.7 354 42.7
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.9e-33 147.5 345 35.7
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.3e-32 144.8 389 33.4
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 2.8e-32 143.7 270 42.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 2.4e-31 140.6 368 38.0
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.4e-31 140.6 398 34.9
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 5.8e-30 136.0 332 35.8
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.3e-29 134.8 345 34.2
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.2e-29 134.0 347 40.6
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.2e-29 134.0 387 38.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 8.4e-29 132.1 343 37.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.1e-28 131.7 198 52.0
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.4e-28 131.3 288 37.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.8e-26 124.4 374 32.9
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 3.9e-26 123.2 409 34.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.5e-25 121.3 357 37.8
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.6e-25 119.4 234 42.3
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 5.6e-25 119.4 216 50.5
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 9.6e-25 118.6 336 32.7
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.8e-24 116.3 404 30.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.1e-23 115.2 395 34.9
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.1e-23 113.6 352 33.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.1e-23 113.6 352 33.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.6e-22 110.5 398 30.9
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.5e-22 109.8 197 44.2
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 4.5e-22 109.8 361 34.6
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 5.8e-22 109.4 331 31.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 7.1e-20 102.4 278 34.5
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 4.6e-19 99.8 274 33.2
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 7.9e-19 99.0 274 32.8
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.9e-18 96.7 311 44.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.9e-18 96.7 311 44.1
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 6.7e-18 95.9 331 33.8
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 2.2e-16 90.9 132 54.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.2e-16 90.9 266 36.5
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 4.8e-16 89.7 218 35.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.1e-15 88.6 200 37.5
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 5.3e-15 86.3 252 33.7
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 6.9e-15 85.9 332 32.8
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.0e-14 84.3 330 30.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.6e-14 84.0 325 32.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.6e-14 84.0 325 32.0
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 5.0e-13 79.7 391 34.8
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.0e-13 79.7 221 36.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 8.5e-13 79.0 224 35.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 8.5e-13 79.0 224 35.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.4e-12 78.2 375 29.1
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.2e-12 77.0 240 33.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 5.5e-12 76.3 220 34.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.5e-12 76.3 330 40.0
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 7.2e-12 75.9 138 46.4
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 4.3e-09 66.6 295 29.2
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.8e-08 63.9 81 49.4
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 3.7e-08 63.5 72 48.6
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.3e-08 62.8 81 48.1
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.5e-06 58.2 265 27.9
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.0e-06 57.8 229 30.6


User provided reference genes

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