Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 3030.7 1565 100.0
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 2127.4 1605 73.2
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1351.7 1675 52.2
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1278.1 1620 50.8
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1278.1 1620 51.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1261.1 1620 50.4
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1257.7 1598 50.6
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1243.4 1625 50.1
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1218.4 1630 50.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1200.3 1623 49.7
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1194.9 1625 48.9
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1177.9 1636 48.4
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1157.5 1631 47.8
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1157.5 1613 48.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1149.0 1621 47.1
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1146.0 1695 46.3
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1133.6 1613 48.0
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1128.6 1705 46.5
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1099.7 1606 47.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1097.0 1631 46.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1088.9 1612 46.7
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1085.9 1660 45.1
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1079.3 1624 46.3
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 3.2e-306 1055.8 1631 46.0
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 3.2e-306 1055.8 1661 44.6
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.0e-304 1050.8 1652 45.1
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.3e-304 1050.4 1614 45.5
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 5.8e-300 1035.0 1622 44.2
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-294 1017.3 1633 44.6
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.7e-294 1015.8 1637 44.6
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 3.7e-286 989.2 1634 43.8
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-283 980.7 1644 43.5
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-283 980.7 1632 43.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.8e-283 979.2 1626 43.5
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 7.1e-282 974.9 1660 42.8
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.0e-280 971.1 1635 43.6
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.7e-280 968.0 1636 42.8
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.5e-279 967.2 1430 46.9
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.5e-279 966.5 1621 44.1
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.6e-278 963.8 1624 43.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.9e-273 944.9 1629 43.2
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.8e-272 943.7 1610 42.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 8.8e-272 941.4 1630 43.0
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 3.6e-265 919.5 1628 43.2
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.7e-264 915.2 1646 42.2
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 4.4e-263 912.5 1642 42.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.0e-260 903.7 1630 42.4
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.5e-259 898.7 1608 42.1
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 4.7e-257 892.5 1617 41.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.8e-256 890.6 1536 41.8
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 7.7e-252 875.2 1619 41.8
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.2e-249 867.8 1604 41.2
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 3.0e-248 863.2 1624 40.3
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 6.7e-248 862.1 1629 41.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.5e-247 860.9 1630 40.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 7.5e-247 858.6 1656 39.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.7e-246 856.3 1621 40.7
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.1e-245 854.7 1620 40.6
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.7e-244 850.1 1614 40.0
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 6.1e-241 839.0 1622 40.5
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 9.8e-239 831.6 1640 39.0
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.3e-238 828.9 1610 39.9
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 9.1e-237 825.1 1616 40.4
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.5e-236 823.2 1628 40.7
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.6e-233 814.3 1641 38.9
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 6.1e-233 812.4 1666 40.0
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.8e-230 803.5 1607 40.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.8e-228 795.4 1615 39.5
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.9e-227 793.5 1604 39.7
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.9e-222 776.9 1705 37.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 6.0e-220 769.2 1602 38.5
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.9e-214 749.6 1610 39.0
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 2.4e-213 747.3 1636 38.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.0e-213 745.7 1398 40.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.3e-211 741.5 1599 38.8
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.5e-210 738.0 1308 41.8
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.8e-208 731.1 1591 39.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 3.4e-207 726.9 1642 37.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 7.5e-207 725.7 1609 37.7
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.7e-206 724.5 1624 38.2
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.4e-200 704.9 1608 37.1
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.9e-198 696.4 1637 37.8
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.4e-198 696.0 1630 37.9
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.6e-196 691.4 1597 37.6
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 2.5e-194 684.1 1622 37.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.5e-194 684.1 1745 35.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.8e-190 670.2 1604 36.8
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.6e-186 655.6 1211 40.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.9e-180 636.0 1667 36.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.3e-177 628.6 1598 36.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 2.6e-175 620.9 1607 35.8
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 9.9e-175 619.0 1596 36.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.0e-171 609.0 1608 35.0
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.4e-168 598.6 1585 35.4
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.5e-167 595.1 1600 35.6
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 2.9e-166 590.9 1723 33.7
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.4e-166 589.3 1729 33.7
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.4e-165 588.6 1613 35.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 5.7e-162 576.6 1603 34.7
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-161 574.7 1638 34.4
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 4.8e-161 573.5 1603 34.6
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 6.3e-161 573.2 1363 35.8
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.3e-160 570.1 1587 35.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 9.0e-160 569.3 1588 35.1
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 5.0e-158 563.5 1612 34.3
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.1e-154 552.4 1221 39.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 7.7e-151 539.7 1597 33.6
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 3.8e-150 537.3 1599 34.1
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 5.5e-149 533.5 1653 32.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.0e-147 529.3 1601 34.0
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 8.8e-147 526.2 780 45.8
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-142 512.3 1599 33.1
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.8e-139 501.9 1599 33.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 3.0e-139 501.1 1570 31.9
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.7e-137 495.4 1599 32.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.5e-135 487.6 720 47.8
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.7e-130 469.5 969 38.5
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.4e-128 465.7 1570 31.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 5.9e-127 460.3 1591 33.2
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 5.2e-123 447.2 1611 30.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.8e-123 446.4 1478 31.4
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.4e-120 439.1 1551 31.5
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 4.1e-120 437.6 1678 31.7
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.4e-106 391.0 689 41.8
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-100 372.9 335 63.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.2e-79 303.1 488 42.8
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.4e-72 279.6 1571 28.1
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 4.2e-72 278.1 193 79.8
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.1e-67 261.9 202 72.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 3.9e-62 245.0 836 33.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 5.6e-61 241.1 1646 26.2
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.1e-60 239.2 1455 28.4
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.3e-54 219.2 540 36.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.1e-54 218.0 200 63.5
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.7e-54 217.2 1325 27.8
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.9e-51 207.6 451 38.4
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.9e-51 207.6 1447 26.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.7e-45 188.0 1570 26.2
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.8e-43 183.0 207 57.5
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.4e-34 152.1 1311 25.2
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.5e-32 144.8 373 34.6
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.8e-30 139.8 504 36.1
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.6e-29 136.0 88 77.3
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.9e-26 124.8 184 42.9
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.4e-24 117.5 144 49.3
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.1e-23 116.3 187 46.5
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.7e-23 115.9 1391 26.5
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.4e-19 103.6 233 39.5
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-19 103.6 187 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 2.7e-18 99.4 467 30.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.5e-18 98.6 170 45.9
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.0e-14 85.5 148 41.2
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 9.8e-13 80.9 600 28.7
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.8e-13 80.9 248 29.8
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 4.1e-11 75.5 179 36.9
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 3.5e-10 72.4 509 28.1
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.0e-09 70.9 140 37.9
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 2.5e-08 66.2 108 50.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.0e-06 58.9 1389 24.5
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 6.8e-06 58.2 77 48.1


User provided reference genes

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