Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.8e-176 622.5 319 100.0
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.0e-82 310.1 304 54.3
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.6e-82 309.7 292 57.5
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 4.2e-80 302.4 354 50.8
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.2e-79 300.8 394 47.2
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 1.2e-79 300.8 362 49.7
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.6e-79 299.3 399 47.1
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 6.1e-79 298.5 394 47.2
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 7.9e-79 298.1 399 46.6
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 3.0e-78 296.2 362 49.2
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 5.1e-78 295.4 302 55.3
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.1e-77 294.3 326 51.8
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.5e-77 293.9 385 47.8
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 5.7e-77 292.0 362 48.1
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 5.7e-77 292.0 318 52.8
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 7.4e-77 291.6 326 52.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 9.7e-77 291.2 383 46.5
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 9.7e-77 291.2 380 46.8
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.8e-76 289.7 383 47.8
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 4.8e-76 288.9 308 52.9
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 4.8e-76 288.9 309 53.1
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 2.4e-75 286.6 421 45.1
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 6.9e-75 285.0 294 52.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.2e-74 284.3 305 50.8
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.2e-74 284.3 347 46.7
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 2.6e-74 283.1 308 52.3
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.6e-74 283.1 302 54.6
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 5.9e-74 282.0 320 51.9
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 5.9e-74 282.0 320 51.9
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 5.9e-74 282.0 285 56.8
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 3.8e-73 279.3 340 47.6
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 8.5e-73 278.1 312 52.6
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.9e-72 276.9 300 53.3
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.5e-72 276.6 396 44.2
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 4.2e-72 275.8 384 46.6
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 7.2e-72 275.0 298 51.7
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.6e-71 272.7 439 42.8
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 3.6e-71 272.7 407 45.9
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 7.9e-71 271.6 479 40.7
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 7.9e-71 271.6 347 47.6
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.0e-70 271.2 438 40.9
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 3.0e-70 269.6 371 43.1
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 3.0e-70 269.6 471 40.3
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 5.1e-70 268.9 402 43.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 8.8e-70 268.1 327 48.0
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.1e-69 267.7 354 45.5
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 2.6e-69 266.5 327 49.2
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.4e-69 265.8 323 49.2
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.3e-68 264.2 350 45.1
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.7e-68 263.8 425 43.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.2e-68 263.5 385 43.6
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 6.3e-68 261.9 353 44.2
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 8.2e-68 261.5 311 47.9
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.8e-67 260.4 432 42.6
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.4e-67 260.0 379 44.1
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 5.3e-67 258.8 351 44.2
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 7.0e-67 258.5 304 49.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 2.6e-66 256.5 473 38.7
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.5e-66 255.8 411 41.6
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 5.9e-66 255.4 425 40.0
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 5.9e-66 255.4 445 40.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 7.7e-66 255.0 453 39.3
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.0e-65 254.6 361 42.7
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.3e-65 254.2 457 41.4
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.8e-65 252.7 371 42.0
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 6.5e-65 251.9 362 42.3
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 8.5e-65 251.5 427 39.6
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.5e-64 250.0 420 40.5
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.6e-63 247.3 525 36.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.7e-63 246.5 299 49.8
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.6e-63 246.1 346 43.6
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 6.7e-62 241.9 315 47.3
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.6e-61 240.0 458 39.1
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.5e-61 238.4 329 43.5
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 9.7e-61 238.0 444 38.1
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.3e-60 237.7 458 38.4
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 8.2e-60 235.0 318 44.3
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.5e-58 229.2 328 44.2
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.0e-57 228.0 392 38.5
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.2e-57 226.9 371 39.6
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.2e-57 226.9 385 39.7
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 6.5e-57 225.3 355 40.8
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.1e-56 224.6 385 39.0
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.5e-56 224.2 358 40.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.2e-56 221.9 312 45.2
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.2e-55 221.1 383 38.6
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 8.8e-54 214.9 432 34.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-53 214.5 319 41.1
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.4e-53 212.6 176 61.9
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 5.9e-50 202.2 188 56.9
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 3.8e-49 199.5 161 62.7
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 5.2e-46 189.1 481 29.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.0e-45 187.2 279 42.3
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.8e-45 184.9 165 58.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 1.7e-44 184.1 153 61.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 4.9e-44 182.6 148 59.5
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 4.9e-44 182.6 165 59.4
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.5e-42 176.4 325 38.5
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.5e-40 170.2 294 38.1
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 5.6e-40 169.1 363 32.5
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 7.3e-40 168.7 479 28.6
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-39 167.9 300 37.7
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 2.8e-39 166.8 156 55.1
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 4.7e-39 166.0 232 43.5
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 6.1e-39 165.6 156 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 8.0e-39 165.2 295 37.3
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.9e-33 146.4 266 36.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.3e-32 142.9 128 57.0
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 2.1e-31 140.6 310 35.5
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.0e-29 134.0 231 39.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.1e-27 128.3 283 32.2
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.7e-26 123.6 85 72.9
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 8.9e-22 108.6 82 67.1
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 7.5e-21 105.5 120 50.0
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-20 104.4 136 46.3
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.7e-20 103.2 78 66.7
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.4e-19 100.5 82 52.4
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.2e-19 100.1 78 64.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 6.0e-18 95.9 232 30.2
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 3.1e-14 83.6 58 67.2
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 2.1e-10 70.9 130 36.2
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 5.1e-09 66.2 286 28.3
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.9e-08 64.3 271 25.1
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 4.3e-08 63.2 274 24.1
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 5.6e-08 62.8 293 24.9
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 9.6e-08 62.0 272 23.5
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 1.6e-07 61.2 271 23.6
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.1e-07 60.8 281 23.8
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 3.6e-07 60.1 277 24.9
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 4.7e-07 59.7 282 23.0
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.7e-07 59.7 272 23.5
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.4e-06 58.2 272 23.5
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.8e-06 57.8 277 23.8
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.8e-06 57.8 277 24.2
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 2.4e-06 57.4 281 22.8
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 3.1e-06 57.0 294 25.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 4.0e-06 56.6 277 22.4
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 4.0e-06 56.6 268 23.5
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 4.0e-06 56.6 266 22.9
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 5.2e-06 56.2 274 23.4
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 5.2e-06 56.2 278 24.1
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 6.8e-06 55.8 268 23.1


User provided reference genes

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