Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.3e-55 219.5 113 100.0
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.1e-42 175.6 116 75.9
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.1e-42 175.6 116 75.0
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.4e-41 172.9 116 74.1
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 5.5e-35 151.0 109 67.0
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 9.5e-35 150.2 110 66.4
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 4.7e-34 147.9 110 64.5
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.0e-33 146.7 109 65.1
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 3.0e-33 145.2 98 70.4
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 8.3e-31 137.1 103 65.0
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 7.0e-30 134.0 109 59.6
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.6e-29 132.9 106 57.5
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.7e-28 129.4 94 60.6
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.8e-28 128.3 103 62.1
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 1.5e-27 126.3 90 62.2
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 2.5e-27 125.6 95 58.9
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 3.3e-27 125.2 98 58.2
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 3.3e-27 125.2 90 61.1
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 4.3e-27 124.8 80 67.5
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 5.6e-27 124.4 76 69.7
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.3e-27 124.0 80 66.2
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.2e-26 123.2 99 60.6
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-26 122.9 111 50.5
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 2.8e-26 122.1 106 53.8
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 2.8e-26 122.1 99 59.6
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.6e-26 121.7 91 58.2
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.6e-26 121.7 91 61.5
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 3.6e-26 121.7 93 53.8
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 6.1e-26 120.9 79 64.6
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 6.1e-26 120.9 80 65.0
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.1e-26 120.9 108 53.7
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.0e-25 120.2 97 54.6
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.0e-25 120.2 99 56.6
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.0e-25 120.2 80 65.0
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.0e-25 120.2 107 49.5
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.4e-25 119.8 85 60.0
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.8e-25 119.4 85 61.2
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 1.8e-25 119.4 106 51.9
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 2.3e-25 119.0 102 53.9
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.3e-25 119.0 91 59.3
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 3.0e-25 118.6 85 60.0
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 4.0e-25 118.2 107 52.3
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.0e-25 118.2 93 58.1
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.2e-25 117.9 96 55.2
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 6.8e-25 117.5 99 51.5
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 6.8e-25 117.5 92 58.7
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 8.9e-25 117.1 94 55.3
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.2e-24 116.7 99 57.6
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.2e-24 116.7 92 57.6
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.5e-24 116.3 115 50.4
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.5e-24 116.3 80 60.0
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 2.0e-24 115.9 85 56.5
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 2.0e-24 115.9 84 58.3
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.0e-24 115.9 83 63.9
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.6e-24 115.5 85 56.5
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 2.6e-24 115.5 85 58.8
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 2.6e-24 115.5 79 59.5
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 3.4e-24 115.2 95 57.9
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 4.4e-24 114.8 103 58.3
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 4.4e-24 114.8 106 50.9
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.7e-24 114.4 108 50.0
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 5.7e-24 114.4 87 56.3
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 5.7e-24 114.4 100 53.0
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 7.5e-24 114.0 110 50.0
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 7.5e-24 114.0 79 58.2
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 9.8e-24 113.6 111 49.5
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 1.3e-23 113.2 95 51.6
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 1.3e-23 113.2 80 58.8
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 1.7e-23 112.8 90 56.7
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.7e-23 112.8 84 60.7
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.7e-23 112.8 100 50.0
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 2.2e-23 112.5 81 58.0
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 2.2e-23 112.5 95 50.5
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.2e-23 112.5 85 55.3
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.2e-23 112.5 85 55.3
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.9e-23 112.1 80 55.0
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.9e-23 112.1 84 59.5
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 3.7e-23 111.7 102 50.0
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.7e-23 111.7 83 61.4
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 6.4e-23 110.9 95 50.5
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 8.3e-23 110.5 94 52.1
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.3e-23 110.5 96 53.1
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 8.3e-23 110.5 95 53.7
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.1e-22 110.2 95 49.5
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.1e-22 110.2 98 58.2
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 1.4e-22 109.8 89 56.2
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.4e-22 109.8 74 60.8
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-22 109.8 82 56.1
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.8e-22 109.4 90 61.1
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 2.4e-22 109.0 95 49.5
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 2.4e-22 109.0 101 52.5
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 3.2e-22 108.6 93 50.5
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.2e-22 108.6 84 57.1
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.2e-22 108.6 98 57.1
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.2e-22 108.6 83 59.0
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 5.4e-22 107.8 95 52.6
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 7.0e-22 107.5 118 44.1
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.2e-21 106.7 85 52.9
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.2e-21 106.7 74 60.8
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 1.2e-21 106.7 99 58.6
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.6e-21 106.3 98 50.0
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-21 106.3 85 51.8
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 2.0e-21 105.9 119 46.2
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 2.7e-21 105.5 79 54.4
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 2.7e-21 105.5 81 53.1
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 2.7e-21 105.5 94 51.1
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 3.5e-21 105.1 104 45.2
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 3.5e-21 105.1 100 49.0
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 4.6e-21 104.8 90 53.3
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 5.9e-21 104.4 95 45.3
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 5.9e-21 104.4 101 47.5
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.0e-20 103.6 99 47.5
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-20 103.2 107 49.5
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.3e-20 103.2 83 54.2
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 3.0e-20 102.1 113 43.4
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 5.0e-20 101.3 79 55.7
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 5.0e-20 101.3 112 43.8
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 5.0e-20 101.3 102 49.0
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 6.6e-20 100.9 79 50.6
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 8.6e-20 100.5 80 51.2
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 8.6e-20 100.5 95 48.4
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 8.6e-20 100.5 96 52.1
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.1e-19 100.1 96 47.9
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.5e-19 99.8 121 40.5
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.9e-19 99.4 113 41.6
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 5.6e-19 97.8 95 44.2
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 7.3e-19 97.4 95 45.3
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 7.3e-19 97.4 87 52.9
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 7.3e-19 97.4 80 51.2
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 7.3e-19 97.4 78 52.6
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.3e-19 97.4 82 53.7
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.3e-19 97.4 82 53.7
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 1.2e-18 96.7 101 44.6
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.1e-18 95.9 89 53.9
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 4.7e-18 94.7 90 44.4
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 8.0e-18 94.0 96 46.9
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 1.1e-17 93.6 70 58.6
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.1e-17 92.0 76 51.3
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 3.1e-17 92.0 100 47.0
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 4.0e-17 91.7 113 43.4
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 8.3e-15 84.0 94 44.7
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-14 83.6 90 41.1
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.4e-14 83.2 114 38.6
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 1.4e-14 83.2 95 40.0
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 7.0e-14 80.9 79 51.9
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 9.2e-14 80.5 79 50.6
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 1.0e-12 77.0 97 38.1
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.3e-12 76.6 62 54.8
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 1.7e-12 76.3 98 39.8
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 5.0e-12 74.7 74 50.0
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 5.0e-12 74.7 76 47.4
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 5.0e-12 74.7 74 50.0
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 5.0e-12 74.7 74 50.0
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 5.6e-11 71.2 100 35.0
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 3.6e-10 68.6 93 36.6
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 3.6e-10 68.6 93 36.6
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 4.7e-10 68.2 98 38.8
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 1.1e-09 67.0 92 35.9
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.1e-09 65.5 83 38.6
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.8e-09 64.3 99 35.4
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-08 63.2 101 32.7
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-08 63.2 101 32.7
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-08 63.2 101 32.7
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 5.8e-08 61.2 36 69.4
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 5.8e-08 61.2 98 30.6
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 5.8e-08 61.2 74 32.4
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 7.5e-08 60.8 96 33.3
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 1.7e-07 59.7 102 30.4
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 1.7e-07 59.7 100 31.0
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.2e-07 59.3 98 28.6
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 8.3e-07 57.4 75 37.3
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 1.1e-06 57.0 92 28.3
SMO134G0150 Selaginella moellendorffii HOM05D002739 ORTHO05D002877 1.1e-06 57.0 49 44.9
TAR636G0767 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.4e-06 56.6 69 42.0
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-06 56.2 90 31.1
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 4.1e-06 55.1 94 28.7
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 4.1e-06 55.1 79 35.4
SMO145G0015 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 5.4e-06 54.7 54 38.9
SMO145G0105 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 5.4e-06 54.7 54 38.9
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 5.4e-06 54.7 94 25.5


User provided reference genes

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