Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 7.1e-283 977.6 1005 100.0
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 8.5e-111 406.0 844 70.0
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 2.5e-110 404.4 850 70.6
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 3.6e-109 400.6 840 73.7
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 3.1e-97 360.9 847 67.7
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 4.1e-97 360.5 837 69.9
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 1.6e-96 358.6 839 65.2
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 3.8e-95 354.0 860 57.8
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 2.7e-93 347.8 801 61.8
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 9.8e-91 339.3 528 45.8
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 1.5e-86 325.5 525 45.7
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 1.2e-85 322.4 860 64.1
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 1.6e-85 322.0 837 71.2
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 4.0e-84 317.4 837 69.7
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 6.8e-84 316.6 837 69.5
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 4.1e-81 307.4 497 50.1
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 4.5e-80 303.9 839 69.1
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 6.6e-79 300.1 525 46.5
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 2.5e-78 298.1 525 43.6
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 7.3e-78 296.6 525 45.0
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 7.3e-78 296.6 525 49.3
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-77 295.8 496 45.0
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 2.9e-74 284.6 862 62.4
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 8.3e-74 283.1 524 59.0
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 6.0e-72 276.9 841 59.5
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 4.3e-70 270.8 862 63.6
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 3.6e-69 267.7 808 63.0
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.1e-68 266.2 525 58.3
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 6.8e-68 263.5 839 60.8
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 1.2e-67 262.7 528 55.5
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 2.0e-67 261.9 869 61.4
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 7.1e-65 253.4 701 35.0
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.9e-62 245.4 840 58.7
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 2.1e-61 241.9 808 67.3
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 3.6e-61 241.1 508 41.9
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 5.2e-60 237.3 528 33.7
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 8.9e-60 236.5 860 57.6
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-59 236.1 274 45.6
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 2.0e-59 235.3 528 44.1
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 2.6e-59 235.0 509 44.0
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 5.8e-59 233.8 818 49.8
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 1.7e-58 232.3 274 45.3
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 4.9e-58 230.7 841 53.9
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 8.3e-58 229.9 701 35.1
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 2.4e-57 228.4 527 36.1
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 2.4e-57 228.4 498 54.6
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 9.2e-57 226.5 518 43.4
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 9.2e-57 226.5 861 62.1
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 1.2e-56 226.1 487 54.2
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 4.6e-56 224.2 519 41.4
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 1.6e-53 215.7 362 55.5
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 2.1e-53 215.3 518 42.5
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 2.1e-53 215.3 518 42.5
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 4.6e-48 197.6 512 47.3
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 3.9e-47 194.5 819 56.4
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.1e-44 186.4 254 42.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.2e-41 174.9 840 60.4
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 3.0e-39 168.3 252 37.7
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 3.0e-39 168.3 526 39.2
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 9.6e-38 163.3 832 60.9
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 2.1e-37 162.2 642 69.2
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 3.1e-36 158.3 452 68.8
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 5.8e-35 154.1 189 45.5
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.2e-34 152.1 302 31.8
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 1.6e-32 146.0 389 60.9
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 2.5e-30 138.7 182 40.1
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 4.3e-30 137.9 526 49.4
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 3.7e-29 134.8 257 31.5
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 2.2e-26 125.6 437 69.8
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 3.8e-26 124.8 833 55.2
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 6.5e-26 124.0 833 55.6
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 1.9e-25 122.5 152 44.1
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 2.1e-24 119.0 114 53.5
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 4.3e-22 111.3 147 43.5
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 2.6e-19 102.1 259 30.1
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 7.6e-19 100.5 160 35.0
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.4e-17 96.3 160 32.5
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 2.7e-16 92.0 536 46.5
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.8e-15 89.4 105 45.7
Nitab4.5_0005512g0030 Nicotiana tabacum HOM05D000508 ORTHO05D000371 1.1e-14 86.7 56 64.3
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 1.3e-13 83.2 172 29.7
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 3.1e-12 78.6 109 36.7
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 3.1e-12 78.6 109 36.7
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 3.1e-12 78.6 109 36.7
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 6.9e-12 77.4 92 47.8
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 9.0e-12 77.0 68 47.1
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.5e-11 74.7 115 40.0
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 1.7e-10 72.8 149 28.9
TAR623G1671 Trochodendron aralioides HOM05D006819 ORTHO05D026583 1.7e-10 72.8 149 28.2
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 3.8e-10 71.6 187 27.3
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.0e-10 71.2 116 30.2
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.9e-09 69.3 147 29.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.2e-09 68.6 127 27.6
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 3.2e-09 68.6 101 33.7
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 5.5e-09 67.8 170 27.6
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 5.5e-09 67.8 105 33.3
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 9.4e-09 67.0 170 27.1
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.2e-08 66.6 111 31.5
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.2e-08 66.6 117 31.6
SGA_v2.0_scaffold354G49737 Striga asiatica HOM05D005973 ORTHO05D007285 1.6e-08 66.2 179 23.5
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.7e-08 65.5 111 29.7
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 2.7e-08 65.5 210 21.4
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.6e-08 65.1 191 22.0
FAN10G2343 Fragaria x ananassa HOM05D005973 ORTHO05D007285 3.6e-08 65.1 184 23.9
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 3.6e-08 65.1 111 30.6
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 6.1e-08 64.3 148 27.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.1e-08 64.3 111 29.7
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 6.1e-08 64.3 118 33.1
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 6.1e-08 64.3 184 26.1
FAN03G2603 Fragaria x ananassa HOM05D005973 ORTHO05D007285 7.9e-08 63.9 184 23.9
Lj1g0026088 Lotus japonicus HOM05D007752 ORTHO05D009994 7.9e-08 63.9 166 25.9
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 7.9e-08 63.9 184 23.9
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 7.9e-08 63.9 174 23.0
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.0e-07 63.5 115 30.4
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 1.0e-07 63.5 149 29.5
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 1.4e-07 63.2 117 29.9
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 1.4e-07 63.2 117 29.9
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 1.4e-07 63.2 117 29.9
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 1.8e-07 62.8 183 24.0
Lj1g0004961 Lotus japonicus HOM05D002460 ORTHO05D002716 1.8e-07 62.8 128 30.5
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 1.8e-07 62.8 188 27.1
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 2.3e-07 62.4 182 23.1
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.3e-07 62.4 142 30.3
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 3.0e-07 62.0 193 24.4
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 5.1e-07 61.2 137 28.5
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.1e-07 61.2 108 29.6
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 5.1e-07 61.2 200 21.0
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 6.7e-07 60.8 182 22.5
Oeu028579.1 Olea europaea HOM05D000424 ORTHO05D000355 6.7e-07 60.8 148 25.0
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 8.8e-07 60.5 177 25.4
Actinidia08309 Actinidia chinensis HOM05D000598 ORTHO05D009762 1.1e-06 60.1 56 57.1
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 1.1e-06 60.1 192 24.5
Medtr6g071320 Medicago truncatula HOM05D004271 ORTHO05D006011 1.1e-06 60.1 203 26.1
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 1.5e-06 59.7 145 27.6
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.5e-06 59.7 184 25.0
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 1.5e-06 59.7 177 25.4
PSO170G2530 Papaver somniferum HOM05D008994 ORTHO05D010954 1.5e-06 59.7 113 29.2
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 1.5e-06 59.7 176 27.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.5e-06 59.7 175 26.9
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 1.5e-06 59.7 101 34.7
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.0e-06 59.3 189 26.5
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 2.0e-06 59.3 201 24.9
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 2.0e-06 59.3 247 24.3
COL.COLO4_26085 Corchorus olitorius HOM05D000424 ORTHO05D000355 2.0e-06 59.3 163 27.6
Medtr1g064150 Medicago truncatula HOM05D010072 ORTHO05D011797 2.0e-06 59.3 177 23.7
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 2.0e-06 59.3 120 29.2
FAN15G0476 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.5e-06 58.9 181 27.1
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.5e-06 58.9 141 28.4
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 2.5e-06 58.9 190 25.3
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.5e-06 58.9 101 34.7
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 3.3e-06 58.5 198 20.7
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 3.3e-06 58.5 70 37.1
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 3.3e-06 58.5 97 35.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.3e-06 58.5 125 28.0
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 3.3e-06 58.5 101 30.7
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 3.3e-06 58.5 120 28.3
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 3.3e-06 58.5 143 31.5
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 4.3e-06 58.2 164 25.6
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 5.7e-06 57.8 102 29.4
CDE01G0240 Ceratophyllum demersum HOM05D005862 ORTHO05D007731 5.7e-06 57.8 175 26.3
Ciclev10000792m.g Citrus clementina HOM05D007173 ORTHO05D009151 5.7e-06 57.8 190 24.7
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 5.7e-06 57.8 143 26.6
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 5.7e-06 57.8 215 23.7
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 5.7e-06 57.8 178 23.0
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 5.7e-06 57.8 163 27.0
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 5.7e-06 57.8 135 31.1
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 5.7e-06 57.8 98 34.7
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 5.7e-06 57.8 208 20.7
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 5.7e-06 57.8 179 24.0
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 7.4e-06 57.4 157 25.5
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 7.4e-06 57.4 181 26.0
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 7.4e-06 57.4 152 30.3
Ca_25358_v3 Cicer arietinum L. HOM05D004271 ORTHO05D006011 7.4e-06 57.4 162 25.3
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 7.4e-06 57.4 198 23.7
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 7.4e-06 57.4 124 28.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 7.4e-06 57.4 135 31.1
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 9.7e-06 57.0 204 22.5
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 9.7e-06 57.0 84 35.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 9.7e-06 57.0 238 21.0
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 9.7e-06 57.0 166 23.5
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 9.7e-06 57.0 200 19.5
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 9.7e-06 57.0 193 23.8
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 9.7e-06 57.0 138 26.8


User provided reference genes

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