Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 8.7e-108 393.7 201 100.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.7e-87 326.2 200 80.5
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.4e-86 323.2 205 80.5
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.9e-86 322.8 199 82.9
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 5.5e-86 321.2 205 81.0
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 7.2e-86 320.9 205 79.5
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 7.2e-86 320.9 204 80.9
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 7.2e-86 320.9 204 80.4
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 9.4e-86 320.5 204 82.4
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.2e-85 320.1 200 83.0
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 4.7e-85 318.2 204 79.9
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.7e-85 318.2 204 80.4
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 6.1e-85 317.8 190 86.3
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 8.0e-85 317.4 206 79.6
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.0e-84 317.0 204 80.9
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.0e-84 317.0 204 80.9
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.8e-84 316.2 205 79.0
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.3e-84 315.8 204 80.4
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 3.9e-84 315.1 200 81.5
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 6.7e-84 314.3 205 77.6
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 8.8e-84 313.9 205 79.0
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.5e-83 313.2 201 80.1
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 3.3e-83 312.0 205 78.0
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 3.3e-83 312.0 201 79.6
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 5.7e-83 311.2 204 78.4
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.7e-82 309.7 204 77.5
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.2e-82 309.3 201 78.1
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.2e-82 309.3 201 78.6
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 2.8e-82 308.9 205 76.6
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 4.8e-82 308.1 204 77.9
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 8.2e-82 307.4 195 80.0
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 8.2e-82 307.4 183 84.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.1e-81 307.0 202 78.7
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.4e-81 306.6 206 76.7
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.4e-81 306.6 206 76.7
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-81 306.6 201 77.6
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-81 306.6 201 77.6
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 2.4e-81 305.8 206 76.2
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.4e-81 305.8 204 77.0
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 3.1e-81 305.4 200 79.0
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 4.1e-81 305.1 200 78.5
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 4.1e-81 305.1 205 75.6
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 4.1e-81 305.1 201 78.1
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 7.0e-81 304.3 201 77.1
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 7.0e-81 304.3 201 78.1
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.2e-80 303.5 205 76.1
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.6e-80 303.1 183 83.6
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 4.5e-80 301.6 205 76.6
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 5.9e-80 301.2 185 82.7
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.7e-79 299.7 198 75.8
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 2.2e-79 299.3 220 73.2
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 2.9e-79 298.9 201 75.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.8e-79 298.5 200 75.5
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.8e-79 298.5 200 75.5
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 5.0e-79 298.1 203 74.9
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 8.5e-79 297.4 203 79.3
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.9e-78 296.2 205 76.1
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 2.5e-78 295.8 202 74.3
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.5e-78 295.8 202 76.2
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 3.2e-78 295.4 203 74.9
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 3.2e-78 295.4 201 73.6
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 4.2e-78 295.0 202 74.8
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 4.2e-78 295.0 202 75.7
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 4.2e-78 295.0 202 75.7
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 4.2e-78 295.0 202 75.7
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 9.4e-78 293.9 203 76.4
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.1e-77 292.7 222 70.7
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 2.7e-77 292.4 202 74.8
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 2.7e-77 292.4 191 78.5
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 3.6e-77 292.0 204 73.0
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 3.6e-77 292.0 200 76.0
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 3.6e-77 292.0 205 75.1
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 3.6e-77 292.0 199 75.9
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 3.6e-77 292.0 200 72.5
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.7e-77 291.6 204 74.5
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 6.1e-77 291.2 206 75.2
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 8.0e-77 290.8 206 75.2
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 8.0e-77 290.8 205 72.2
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 1.4e-76 290.0 193 75.1
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 1.4e-76 290.0 190 79.5
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.3e-76 289.3 202 73.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 3.0e-76 288.9 194 75.3
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.0e-76 288.5 197 76.6
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 5.2e-76 288.1 191 76.4
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 5.2e-76 288.1 202 74.8
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.0e-75 286.2 197 74.6
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.4e-75 285.0 191 75.9
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 5.7e-75 284.6 201 72.6
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 8.2e-74 280.8 229 65.9
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.6e-72 276.6 188 74.5
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 2.9e-71 272.3 222 67.1
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 5.5e-70 268.1 315 50.8
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 3.0e-68 262.3 203 66.5
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 4.0e-68 261.9 188 73.4
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 4.0e-68 261.9 201 67.2
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 5.2e-68 261.5 240 60.8
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.3e-66 256.9 206 66.5
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 7.0e-65 251.1 161 78.9
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 5.0e-63 245.0 164 75.6
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.0e-60 237.3 200 63.5
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 2.4e-57 226.1 155 74.8
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 2.3e-52 209.5 132 81.1
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 6.8e-52 208.0 116 89.7
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 9.8e-51 204.1 134 76.9
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 2.0e-48 196.4 106 89.6
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 3.5e-48 195.7 133 76.7
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.3e-47 193.7 118 83.1
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 8.6e-47 191.0 134 74.6
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 7.3e-46 188.0 122 76.2
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.1e-45 186.4 152 63.8
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.9e-41 173.3 108 80.6
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.1e-36 156.0 147 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.4e-33 147.1 175 42.9
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 2.4e-33 146.4 191 48.7
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.7e-31 140.2 190 43.7
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 3.0e-31 139.4 92 78.3
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 3.4e-27 125.9 138 48.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-25 119.4 134 50.0
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 2.7e-24 116.3 184 39.1
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 3.5e-24 115.9 198 42.9
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 9.6e-22 107.8 229 32.8
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 3.4e-11 72.8 150 33.3
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.4e-10 68.6 48 70.8
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 3.2e-09 66.2 66 51.5
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 2.1e-08 63.5 55 61.8
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 7.9e-08 61.6 33 84.8
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.3e-06 55.8 33 78.8


User provided reference genes

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