Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 0.0e+00 1287.3 690 100.0
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 7.2e-287 990.3 679 82.9
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 8.8e-192 674.5 636 65.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.1e-178 630.9 620 62.6
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.0e-176 624.4 662 61.5
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 6.6e-171 605.1 649 59.5
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 1.6e-169 600.5 656 60.4
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 6.8e-168 595.1 640 58.4
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 9.2e-157 558.1 657 53.1
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 3.0e-155 553.1 544 63.1
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.3e-154 549.3 687 50.4
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.1e-153 547.0 660 50.9
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.8e-152 543.9 687 50.2
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.2e-150 537.0 670 51.8
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.4e-149 533.5 562 60.7
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.6e-148 529.3 687 49.6
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.6e-148 529.3 707 48.5
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.7e-147 527.3 687 49.2
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.0e-147 526.6 566 55.1
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.6e-147 525.4 673 54.5
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.1e-146 524.6 673 54.2
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 2.5e-146 523.5 639 51.5
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 4.3e-146 522.7 672 49.7
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 4.3e-146 522.7 562 60.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 7.3e-146 521.9 664 50.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.2e-145 521.2 688 49.1
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 2.3e-144 516.9 664 50.6
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.2e-143 514.6 675 52.9
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 2.0e-143 513.8 653 50.4
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.6e-143 513.5 696 49.3
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.3e-142 511.1 669 49.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.2e-142 510.4 681 49.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.7e-142 509.6 679 53.0
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 4.9e-142 509.2 637 51.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 8.3e-142 508.4 660 50.9
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 2.4e-141 506.9 660 50.5
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 5.1e-139 499.2 676 50.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 6.6e-139 498.8 646 50.2
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 1.1e-138 498.0 676 50.9
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.4e-136 490.3 579 53.5
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.5e-135 487.6 647 47.8
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 2.0e-135 487.3 595 50.4
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.2e-134 483.8 577 52.2
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.6e-132 477.6 640 51.4
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 4.6e-132 476.1 702 48.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 2.3e-131 473.8 609 52.4
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 5.8e-127 459.1 638 45.6
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.7e-118 431.0 442 62.0
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 1.1e-117 428.3 658 46.8
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 3.0e-115 420.2 622 44.7
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.7e-113 413.3 633 44.9
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 1.0e-107 395.2 446 59.6
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 2.3e-107 394.0 433 57.5
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.5e-103 381.3 599 47.2
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 2.6e-103 380.6 540 48.7
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.1e-101 375.2 448 55.6
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 4.8e-97 359.8 298 64.8
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 2.7e-84 317.4 435 48.5
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.5e-79 300.1 311 54.3
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.7e-78 298.1 502 43.2
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 1.6e-76 291.6 676 36.8
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 4.0e-75 287.0 281 58.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.4e-72 277.7 542 39.1
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.1e-72 277.3 282 57.4
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 3.0e-67 260.8 640 35.6
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 5.7e-66 256.5 548 35.9
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 4.2e-61 240.4 391 51.2
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 8.8e-59 232.6 231 54.5
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 7.5e-58 229.6 218 57.3
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 9.8e-58 229.2 385 48.6
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 9.5e-53 212.6 224 51.8
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 4.9e-49 200.3 219 58.0
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 3.7e-41 174.1 499 36.7
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 1.6e-36 158.7 313 36.1
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 3.1e-35 154.5 162 51.9
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.2e-32 144.4 218 40.4
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 1.3e-30 139.0 160 46.9
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 8.6e-30 136.3 145 57.9
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.2e-28 132.5 248 33.5
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.2e-28 132.5 248 33.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.0e-26 125.2 223 35.9
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.8e-23 113.2 218 34.4
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.1e-22 110.5 275 30.9
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 2.5e-21 108.2 118 52.5
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 4.7e-20 104.0 260 33.8
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.9e-19 100.1 286 28.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 9.9e-18 96.3 223 32.7
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.1e-16 92.8 451 28.6
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 4.8e-12 77.4 247 26.3
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.1e-11 74.7 230 27.0
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 4.0e-11 74.3 237 26.2
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 4.0e-11 74.3 230 27.0
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 4.0e-11 74.3 218 25.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.2e-10 72.8 230 27.0
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.0e-10 72.0 243 25.1
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 2.6e-10 71.6 181 27.6
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 3.4e-10 71.2 257 24.1
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 5.8e-10 70.5 231 26.0
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 7.6e-10 70.1 222 25.7
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 7.6e-10 70.1 242 26.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 7.6e-10 70.1 274 24.5
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 9.9e-10 69.7 245 27.8
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 9.9e-10 69.7 245 27.8
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.7e-09 68.9 231 26.4
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.7e-09 68.9 203 24.6
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.2e-09 68.6 103 45.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 2.2e-09 68.6 242 24.4
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.9e-09 68.2 244 24.2
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.9e-09 68.2 205 28.3
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 3.8e-09 67.8 243 26.7
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 3.8e-09 67.8 230 25.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 4.9e-09 67.4 255 24.3
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 4.9e-09 67.4 219 28.3
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 8.4e-09 66.6 246 25.2
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 8.4e-09 66.6 197 25.4
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.1e-08 66.2 206 26.2
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.1e-08 66.2 219 24.7
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.1e-08 66.2 245 24.1
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.9e-08 65.5 204 27.5
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.9e-08 65.5 223 24.7
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.9e-08 65.5 257 24.1
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.4e-08 65.1 266 24.4
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 2.4e-08 65.1 257 24.1
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 3.2e-08 64.7 230 25.7
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 3.2e-08 64.7 248 27.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.2e-08 64.7 241 24.5
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 4.2e-08 64.3 258 26.0
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 7.1e-08 63.5 248 25.4
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 9.3e-08 63.2 232 25.4
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.3e-08 63.2 266 24.1
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 9.3e-08 63.2 266 24.1
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.2e-07 62.8 199 25.6
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.5e-07 61.2 235 24.7
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 4.6e-07 60.8 272 23.5
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 6.0e-07 60.5 252 23.8
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 6.0e-07 60.5 257 25.3
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 7.9e-07 60.1 164 27.4
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 7.9e-07 60.1 259 25.9
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 1.3e-06 59.3 195 23.1
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 1.8e-06 58.9 205 24.9
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.3e-06 58.5 127 30.7
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 2.3e-06 58.5 222 24.8
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 5.1e-06 57.4 210 27.1
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.7e-06 57.0 252 23.8


User provided reference genes

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