Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 0.0e+00 1314.3 651 100.0
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 2.4e-276 955.3 650 72.5
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 3.6e-272 941.4 649 72.7
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 6.4e-269 930.6 679 69.4
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.2e-268 927.9 653 69.5
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.6e-267 926.0 652 69.2
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.3e-266 922.9 654 68.7
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.6e-264 916.0 649 70.4
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.4e-263 912.1 651 68.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.1e-263 911.8 652 66.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.2e-262 909.8 653 68.9
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 4.2e-260 901.4 655 67.6
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.5e-259 898.3 658 67.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 7.9e-259 897.1 655 67.2
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.0e-258 896.7 658 67.6
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.0e-258 895.2 651 67.0
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 5.6e-257 891.0 651 66.8
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.8e-256 887.9 649 67.0
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.8e-255 885.9 651 66.8
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 5.8e-254 880.9 654 66.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.9e-253 878.6 653 66.2
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.5e-252 874.4 654 66.5
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.1e-251 872.5 654 66.1
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 3.9e-250 868.2 655 66.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.1e-250 867.8 646 66.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.5e-249 865.5 653 65.5
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 2.2e-245 852.4 652 64.3
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.2e-245 852.4 652 64.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 5.0e-245 851.3 648 63.6
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.2e-243 846.7 649 65.8
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.6e-243 846.3 661 64.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.1e-243 845.9 652 64.7
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.7e-243 845.5 651 64.5
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 7.9e-243 844.0 656 63.4
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 8.7e-242 840.5 652 63.7
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 8.7e-242 840.5 649 63.9
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-241 839.3 651 65.0
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.9e-241 839.3 623 68.1
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.3e-241 838.6 655 63.5
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.7e-241 837.8 653 63.2
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 7.4e-241 837.4 648 62.7
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.8e-240 834.7 625 65.8
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.8e-240 834.7 625 65.8
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 6.3e-240 834.3 618 66.5
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-239 833.6 649 63.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.4e-239 833.2 648 62.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.8e-239 832.8 652 63.3
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 3.1e-239 832.0 625 66.6
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 6.9e-239 830.9 647 65.2
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.9e-239 830.9 656 63.0
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 9.1e-239 830.5 656 62.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.2e-238 830.1 652 63.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.5e-238 829.7 655 64.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.0e-238 829.3 655 63.2
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.3e-237 826.6 649 63.9
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.9e-237 825.5 652 60.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 3.8e-237 825.1 655 61.7
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 5.0e-237 824.7 656 62.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 6.5e-237 824.3 538 75.3
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 6.5e-237 824.3 649 63.5
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.9e-236 822.8 656 62.3
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.5e-236 822.4 659 61.2
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 3.2e-236 822.0 630 65.7
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 4.2e-236 821.6 659 62.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.6e-235 819.7 654 63.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 3.0e-234 815.5 658 62.8
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 6.7e-234 814.3 663 62.4
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.0e-233 812.8 648 63.6
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 9.7e-233 810.4 666 60.5
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.3e-232 810.1 655 61.4
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.7e-232 809.7 647 61.2
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.8e-232 808.9 655 62.0
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.7e-229 799.7 664 59.3
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.7e-229 799.7 647 61.8
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.8e-229 798.5 613 64.4
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 5.0e-229 798.1 654 61.2
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 5.0e-229 798.1 648 62.3
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.2e-227 793.5 657 60.4
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.6e-225 785.8 655 60.6
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.3e-218 762.7 649 57.3
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 5.5e-212 741.5 674 57.3
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.1e-211 739.6 655 56.6
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 4.4e-209 731.9 649 57.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.8e-207 726.5 646 57.1
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 8.6e-205 717.6 577 62.6
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.3e-200 703.7 647 56.1
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.0e-189 665.2 589 56.0
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 5.4e-183 645.2 486 66.7
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 6.6e-181 638.3 503 62.4
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.1e-178 630.9 619 56.4
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 8.9e-178 627.9 677 51.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.0e-174 615.1 574 57.7
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.7e-166 589.7 658 49.1
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 6.2e-155 552.0 593 51.4
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 5.8e-153 545.4 479 58.5
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.1e-150 537.0 646 43.8
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.9e-142 508.4 643 45.6
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.1e-135 488.0 657 43.2
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 5.3e-130 469.2 254 86.6
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.2e-126 458.0 549 47.7
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 2.2e-112 410.6 389 51.2
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.2e-104 384.0 361 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.7e-96 357.8 655 37.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 5.0e-96 356.3 399 47.1
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 8.5e-96 355.5 296 62.2
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 4.2e-95 353.2 483 42.0
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.7e-94 350.5 178 88.8
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 3.1e-90 337.0 427 43.3
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 9.2e-82 308.9 197 74.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 9.5e-63 245.7 276 45.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.6e-56 223.0 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.6e-55 219.9 104 95.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 5.2e-53 213.4 106 87.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 3.2e-50 204.1 224 45.5
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.2e-36 159.1 491 28.9
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 4.5e-36 157.1 200 41.5
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 3.8e-35 154.1 137 59.9
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.8e-35 154.1 178 48.3
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.9e-31 141.7 155 50.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 4.5e-28 130.6 68 88.2
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.1e-26 125.9 58 89.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.0e-25 120.2 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 7.9e-25 119.8 82 69.5
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.5e-23 115.5 102 54.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.5e-18 98.2 44 93.2
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.0e-16 91.3 76 61.8
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 74 63.5
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 6.7e-16 90.1 74 62.2
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 74 62.2
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 3.3e-15 87.8 74 60.8
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.2e-14 85.1 74 60.8
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.9e-11 74.7 75 54.7
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.9e-11 74.7 75 53.3
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 2.3e-08 65.1 103 34.0
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 3.9e-08 64.3 95 41.1
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 7.4e-07 60.1 95 37.9


User provided reference genes

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