Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0069 Tripterygium wilfordii HOM05D002907 ORTHO05D005554 1.3e-91 339.7 169 100.0
TWI31G1318 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.0e-21 105.5 136 41.2
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-16 90.1 101 42.6
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-16 90.1 101 42.6
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.6e-16 87.8 108 35.2
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 1.9e-15 86.7 101 36.6
Sopen02g003400 Solanum pennellii HOM05D002907 ORTHO05D005554 9.5e-15 84.3 125 31.2
Nitab4.5_0000162g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 1.6e-14 83.6 128 33.6
CAN.G419.22 Capsicum annuum HOM05D002907 ORTHO05D005554 8.1e-14 81.3 107 35.5
Nitab4.5_0002746g0010 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.3e-13 79.7 113 34.5
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 2.3e-13 79.7 164 29.9
Sopen01g012720 Solanum pennellii HOM05D002907 ORTHO05D005554 6.8e-13 78.2 149 28.2
Solyc10g074430.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 8.9e-13 77.8 155 29.0
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 2.0e-12 76.6 155 29.0
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 3.4e-12 75.9 106 37.7
Nitab4.5_0000011g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 5.8e-12 75.1 160 31.2
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 1.7e-11 73.6 155 28.4
CANSAT01G3093 Cannabis sativa HOM05D002907 ORTHO05D005554 3.7e-11 72.4 118 29.7
CANSAT35G0321 Cannabis sativa HOM05D002907 ORTHO05D005554 4.9e-11 72.0 118 29.7
Nitab4.5_0002986g0060 Nicotiana tabacum HOM05D002907 ORTHO05D005554 4.9e-11 72.0 157 29.9
CANSAT01G2740 Cannabis sativa HOM05D002907 ORTHO05D005554 6.4e-11 71.6 106 30.2
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 1.9e-10 70.1 172 31.4
Peaxi162Scf00431g00511 Petunia axillaris HOM05D002907 ORTHO05D005554 1.9e-10 70.1 106 34.9
QL01p044581 Quercus lobata HOM05D002907 ORTHO05D005554 1.9e-10 70.1 91 36.3
QL01p044591 Quercus lobata HOM05D002907 ORTHO05D005554 1.9e-10 70.1 91 36.3
Aqoxy4G01036 Aquilegia oxysepala HOM05D000100 ORTHO05D000052 3.2e-10 69.3 151 29.1
Aqoxy3G01099 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 4.1e-10 68.9 151 29.1
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 5.4e-10 68.6 105 38.1
CANSAT56G4249 Cannabis sativa HOM05D002907 ORTHO05D005554 7.1e-10 68.2 106 29.2
Peaxi162Scf00073g02336 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-09 67.4 121 33.1
Peaxi162Scf00661g00421 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-09 67.4 121 33.1
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-09 67.4 121 33.1
Aqoxy109s001 Aquilegia oxysepala HOM05D000494 ORTHO05D005554 1.6e-09 67.0 151 29.1
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 1.6e-09 67.0 128 28.1
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 1.6e-09 67.0 91 35.2
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 2.7e-09 66.2 108 35.2
DCAR_011057 Daucus carota HOM05D002907 ORTHO05D000065 2.7e-09 66.2 109 28.4
Medtr5g027390 Medicago truncatula HOM05D002907 ORTHO05D000065 2.7e-09 66.2 105 30.5
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 3.5e-09 65.9 154 27.9
DCAR_025606 Daucus carota HOM05D012849 ORTHO05D000065 4.6e-09 65.5 128 25.8
BcaC03g16108 Brassica carinata HOM05D000313 ORTHO05D000065 6.0e-09 65.1 140 29.3
Nitab4.5_0000248g0100 Nicotiana tabacum HOM05D002907 ORTHO05D005554 7.8e-09 64.7 100 32.0
Solyc02g055537.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 7.8e-09 64.7 104 29.8
BcaB05g24332 Brassica carinata HOM05D000313 ORTHO05D000065 1.0e-08 64.3 96 35.4
BcaC04g20435 Brassica carinata HOM05D000305 ORTHO05D000065 1.0e-08 64.3 100 32.0
A09p69300 Brassica napus HOM05D000305 ORTHO05D000065 1.0e-08 64.3 100 32.0
C08p54120 Brassica napus HOM05D000313 ORTHO05D000065 1.0e-08 64.3 100 32.0
BolC8t52920H Brassica oleracea HOM05D000305 ORTHO05D000065 1.0e-08 64.3 100 32.0
C07p16110 Brassica napus HOM05D009574 ORTHO05D012637 1.3e-08 63.9 98 36.7
DCAR_024022 Daucus carota HOM05D002907 ORTHO05D005554 1.3e-08 63.9 116 28.4
DCAR_031299 Daucus carota HOM05D000001 ORTHO05D000003 1.3e-08 63.9 108 28.7
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 1.3e-08 63.9 100 31.0
DCAR_004801 Daucus carota HOM05D002907 ORTHO05D000065 1.7e-08 63.5 124 30.6
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 2.3e-08 63.2 87 33.3
CAN.G1243.6 Capsicum annuum HOM05D002907 ORTHO05D005554 2.3e-08 63.2 85 36.5
BcaB01g05981 Brassica carinata HOM05D009574 ORTHO05D012637 3.9e-08 62.4 90 37.8
BcaB07g33686 Brassica carinata HOM05D000313 ORTHO05D000065 3.9e-08 62.4 106 33.0
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 3.9e-08 62.4 100 30.0
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 3.9e-08 62.4 100 30.0
Solyc02g044000.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.9e-08 62.4 112 27.7
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.9e-08 62.4 114 35.1
DCAR_031322 Daucus carota HOM05D002907 ORTHO05D000065 5.1e-08 62.0 103 28.2
Hma1.2p1_0051F.1_g029450 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 5.1e-08 62.0 102 29.4
QL03p038017 Quercus lobata HOM05D000313 ORTHO05D000065 5.1e-08 62.0 109 29.4
DCAR_032054 Daucus carota HOM05D002907 ORTHO05D000065 6.6e-08 61.6 123 26.8
HanXRQChr09g0254941 Helianthus annuus HOM05D003964 ORTHO05D000174 6.6e-08 61.6 95 35.8
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 6.6e-08 61.6 154 27.3
Peaxi162Scf00203g01424 Petunia axillaris HOM05D002907 ORTHO05D005554 6.6e-08 61.6 150 28.7
PGSC0003DMG400044579 Solanum tuberosum HOM05D002907 ORTHO05D005554 8.6e-08 61.2 146 28.8
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 8.6e-08 61.2 114 34.2
Ah.08g210030 Amaranthus hybridus HOM05D002441 ORTHO05D002376 1.1e-07 60.8 93 35.5
BcaB05g24308 Brassica carinata HOM05D000313 ORTHO05D000065 1.1e-07 60.8 110 30.0
C03p67840 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-07 60.8 102 32.4
BolSC21t60252H Brassica oleracea HOM05D000313 ORTHO05D000065 1.1e-07 60.8 102 32.4
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-07 60.8 136 25.0
BcaB06g27533 Brassica carinata HOM05D000313 ORTHO05D000065 1.5e-07 60.5 100 29.0
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 1.5e-07 60.5 113 25.7
BcaB08g35018 Brassica carinata HOM05D000305 ORTHO05D000065 1.9e-07 60.1 103 30.1
BcaC01g00855 Brassica carinata HOM05D011161 ORTHO05D015401 1.9e-07 60.1 115 31.3
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.9e-07 60.1 94 36.2
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.9e-07 60.1 94 36.2
DCAR_028556 Daucus carota HOM05D002907 ORTHO05D000065 1.9e-07 60.1 114 29.8
ECA238G2764 Erigeron canadensis HOM05D003964 ORTHO05D002376 1.9e-07 60.1 87 37.9
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 1.9e-07 60.1 107 28.0
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 1.9e-07 60.1 102 29.4
BcaNung02470 Brassica carinata HOM05D000313 ORTHO05D000065 2.5e-07 59.7 110 27.3
A03p65540 Brassica napus HOM05D000313 ORTHO05D000065 2.5e-07 59.7 112 29.5
C07p40640 Brassica napus HOM05D000313 ORTHO05D000065 2.5e-07 59.7 110 27.3
BraA03t15605Z Brassica rapa HOM05D000313 ORTHO05D000065 2.5e-07 59.7 112 29.5
ECA233G0025 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.5e-07 59.7 99 35.4
CAN.G98.12 Capsicum annuum HOM05D002907 ORTHO05D005554 3.3e-07 59.3 104 28.8
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-07 59.3 82 36.6
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 4.3e-07 58.9 115 27.0
BcaC04g18697 Brassica carinata HOM05D000313 ORTHO05D000065 4.3e-07 58.9 90 33.3
A03p36970 Brassica napus HOM05D000313 ORTHO05D000065 4.3e-07 58.9 110 28.2
A09p35480 Brassica napus HOM05D000305 ORTHO05D000065 4.3e-07 58.9 120 30.8
BraA03t12859Z Brassica rapa HOM05D000313 ORTHO05D000065 4.3e-07 58.9 110 28.2
A02p26890 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-07 58.5 110 29.1
C05p18010 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-07 58.5 104 28.8
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 5.6e-07 58.5 114 30.7
BraA08t34530Z Brassica rapa HOM05D000313 ORTHO05D000065 5.6e-07 58.5 106 30.2
CAN.G181.45 Capsicum annuum HOM05D002907 ORTHO05D005554 5.6e-07 58.5 129 29.5
DCAR_001457 Daucus carota HOM05D002907 ORTHO05D000065 5.6e-07 58.5 100 29.0
ECA240G4108 Erigeron canadensis HOM05D003964 ORTHO05D002376 5.6e-07 58.5 82 36.6
HanXRQChr05g0143541 Helianthus annuus HOM05D003964 ORTHO05D000174 5.6e-07 58.5 94 30.9
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 5.6e-07 58.5 177 27.1
Medtr8g039210 Medicago truncatula HOM05D000096 ORTHO05D000045 5.6e-07 58.5 104 28.8
Nitab4.5_0026714g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 5.6e-07 58.5 103 30.1
Aqoxy1G03362 Aquilegia oxysepala HOM05D012322 ORTHO05D014819 7.3e-07 58.2 111 33.3
DCAR_005332 Daucus carota HOM05D002907 ORTHO05D000065 7.3e-07 58.2 127 26.8
ECA247G2253 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.3e-07 58.2 99 28.3
BolC2t12325H Brassica oleracea HOM05D000313 ORTHO05D000065 9.5e-07 57.8 106 30.2
BraA03t14449Z Brassica rapa HOM05D000313 ORTHO05D000065 9.5e-07 57.8 110 27.3
BcaC05g25301 Brassica carinata HOM05D011161 ORTHO05D012637 1.2e-06 57.4 153 30.7
BcaC09g48413 Brassica carinata HOM05D000313 ORTHO05D000065 1.2e-06 57.4 112 28.6
C01p50060 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-06 57.4 112 28.6
C08p36910 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-06 57.4 110 28.2
BolC1t04960H Brassica oleracea HOM05D000313 ORTHO05D000065 1.2e-06 57.4 112 28.6
BolC5t29929H Brassica oleracea HOM05D011161 ORTHO05D012637 1.2e-06 57.4 153 30.7
ECA247G4094 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.2e-06 57.4 104 30.8
HanXRQChr13g0412841 Helianthus annuus HOM05D003964 ORTHO05D000174 1.2e-06 57.4 161 29.8
HanXRQChr15g0464461 Helianthus annuus HOM05D003964 ORTHO05D000174 1.2e-06 57.4 112 29.5
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 1.2e-06 57.4 114 27.2
C02p20670 Brassica napus HOM05D000313 ORTHO05D000065 1.6e-06 57.0 96 32.3
DCAR_022271 Daucus carota HOM05D012849 ORTHO05D014614 1.6e-06 57.0 105 28.6
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.6e-06 57.0 104 30.8
HanXRQChr08g0227821 Helianthus annuus HOM05D007823 ORTHO05D000174 1.6e-06 57.0 112 29.5
HanXRQChr09g0257401 Helianthus annuus HOM05D003964 ORTHO05D000174 1.6e-06 57.0 113 28.3
HanXRQChr12g0361281 Helianthus annuus HOM05D003964 ORTHO05D000174 1.6e-06 57.0 113 29.2
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 1.6e-06 57.0 80 33.8
BcaC01g02105 Brassica carinata HOM05D011161 ORTHO05D012637 2.1e-06 56.6 111 36.9
C08p15350 Brassica napus HOM05D000313 ORTHO05D000065 2.1e-06 56.6 110 28.2
BraA09t38616Z Brassica rapa HOM05D000305 ORTHO05D000065 2.1e-06 56.6 96 32.3
HanXRQChr14g0428201 Helianthus annuus HOM05D003964 ORTHO05D000174 2.1e-06 56.6 112 29.5
Lsat_1_v5_gn_1_81940 Lactuca sativa HOM05D007823 ORTHO05D000174 2.1e-06 56.6 99 32.3
Lsat_1_v5_gn_8_54441 Lactuca sativa HOM05D007823 ORTHO05D000174 2.1e-06 56.6 99 32.3
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 2.1e-06 56.6 96 24.0
Nitab4.5_0000745g0100 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.1e-06 56.6 78 35.9
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 2.1e-06 56.6 100 29.0
Aqoxy4G01560 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 2.8e-06 56.2 111 28.8
DCAR_001059 Daucus carota HOM05D002907 ORTHO05D000065 2.8e-06 56.2 88 30.7
HanXRQChr04g0101601 Helianthus annuus HOM05D003964 ORTHO05D000174 2.8e-06 56.2 100 33.0
Lj7A628T41 Lonicera japonica HOM05D002907 ORTHO05D000065 2.8e-06 56.2 105 26.7
A09p30460 Brassica napus HOM05D000305 ORTHO05D000065 3.6e-06 55.8 108 29.6
ECA240G1473 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.6e-06 55.8 105 34.3
HanXRQChr01g0013421 Helianthus annuus HOM05D003964 ORTHO05D000174 3.6e-06 55.8 95 31.6
HanXRQChr05g0155711 Helianthus annuus HOM05D003964 ORTHO05D000174 3.6e-06 55.8 95 31.6
BcaC05g27392 Brassica carinata HOM05D000313 ORTHO05D000065 4.7e-06 55.5 102 27.5
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 4.7e-06 55.5 81 37.0
C06p47470 Brassica napus HOM05D000313 ORTHO05D000065 4.7e-06 55.5 101 34.7
C08p01640 Brassica napus HOM05D000313 ORTHO05D000065 4.7e-06 55.5 98 33.7
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 4.7e-06 55.5 81 37.0
BolC5t32063H Brassica oleracea HOM05D000313 ORTHO05D000065 4.7e-06 55.5 110 27.3
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 4.7e-06 55.5 105 34.3
HanXRQChr13g0403861 Helianthus annuus HOM05D003964 ORTHO05D000174 4.7e-06 55.5 141 27.7
HanXRQChr14g0436911 Helianthus annuus HOM05D003964 ORTHO05D000174 4.7e-06 55.5 141 27.7
Aqoxy5G02969 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 6.2e-06 55.1 113 32.7
C05p00200 Brassica napus HOM05D000313 ORTHO05D000065 6.2e-06 55.1 101 34.7
C07p05180 Brassica napus HOM05D000313 ORTHO05D000065 6.2e-06 55.1 101 34.7
BolC2t08209H Brassica oleracea HOM05D000313 ORTHO05D000065 6.2e-06 55.1 97 32.0
ECA233G5850 Erigeron canadensis HOM05D003964 ORTHO05D002376 6.2e-06 55.1 105 33.3
ECA234G2462 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.2e-06 55.1 82 36.6
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.2e-06 55.1 105 29.5
Nitab4.5_0000037g0150 Nicotiana tabacum HOM05D002907 ORTHO05D005554 6.2e-06 55.1 72 36.1
Sp6g12620 Schrenkiella parvula HOM05D000313 ORTHO05D000065 6.2e-06 55.1 117 23.1
SpUn0015_0020 Schrenkiella parvula HOM05D000313 ORTHO05D000065 6.2e-06 55.1 117 23.1
SpUn0039_0070 Schrenkiella parvula HOM05D000313 ORTHO05D000065 6.2e-06 55.1 117 23.1
Solyc06g011610.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 6.2e-06 55.1 98 29.6
A09p28970 Brassica napus HOM05D000353 ORTHO05D000174 8.1e-06 54.7 99 27.3
C02p57090 Brassica napus HOM05D000313 ORTHO05D000065 8.1e-06 54.7 105 28.6
BraA09t38461Z Brassica rapa HOM05D000353 ORTHO05D000174 8.1e-06 54.7 99 27.3
DCAR_000518 Daucus carota HOM05D002907 ORTHO05D000065 8.1e-06 54.7 101 23.8
ECA236G2182 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.1e-06 54.7 128 31.2
HanXRQChr15g0487781 Helianthus annuus HOM05D003964 ORTHO05D000174 8.1e-06 54.7 95 32.6
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 8.1e-06 54.7 168 29.2


User provided reference genes

Program Settings