Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.5e-103 378.3 187 100.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 93.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 91.4
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 7.1e-96 354.0 186 91.9
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 92.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 92.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 92.0
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 91.4
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.4
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.9
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 91.4
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 92.0
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 91.4
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.6e-95 351.3 208 85.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.4
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 92.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 91.4
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 90.4
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 90.4
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 184 92.4
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 89.3
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 90.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.1e-94 347.8 200 86.5
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 89.8
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 89.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.8
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.3
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.8
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-93 346.7 182 92.9
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 88.8
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.8
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.3
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.3
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.3
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.2
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.8
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.8
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.7e-93 344.4 186 89.2
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.8
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 89.3
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 87.7
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 87.7
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.2
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 88.2
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 88.2
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.2
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 6.2e-92 340.9 193 86.5
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.1e-91 340.1 196 85.7
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.7
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.2
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 84.5
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.6
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 87.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 86.1
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 85.6
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 87.2
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 85.6
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 85.0
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 86.1
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 84.5
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 86.6
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.0
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 86.6
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 85.0
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 5.8e-90 334.3 186 84.9
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 85.6
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 85.6
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.0e-89 333.6 186 87.6
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 84.5
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.3e-89 333.2 188 84.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.3e-89 333.2 188 84.6
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 82.9
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.0e-89 331.3 206 80.1
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 6.5e-89 330.9 201 81.6
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.9e-88 329.3 181 86.7
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.9
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-87 326.6 206 79.1
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.6e-87 326.2 187 84.0
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 7.9e-87 323.9 203 78.3
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.3e-86 322.4 185 82.7
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.0e-86 322.0 183 84.7
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 3.9e-86 321.6 241 68.9
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.8e-84 314.7 211 74.9
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 9.0e-83 310.5 173 85.5
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.9e-81 305.4 169 85.2
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 8.5e-81 303.9 167 86.8
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.5e-80 302.4 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.7e-77 291.2 181 72.9
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.7e-77 291.2 181 72.9
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 7.4e-77 290.8 187 73.3
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.7e-76 289.7 186 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.1e-75 287.0 181 71.8
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.1e-75 285.4 187 77.0
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.5e-74 283.1 154 88.3
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.6e-74 282.3 159 85.5
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.9e-74 281.2 187 74.9
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-73 278.9 172 73.8
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 2.9e-73 278.9 186 69.4
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.5e-73 277.7 180 71.7
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-72 276.9 187 74.3
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-72 276.6 187 74.3
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 5.5e-72 274.6 149 89.3
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 6.7e-70 267.7 148 85.8
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.1e-69 266.9 187 72.7
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.0e-66 256.1 214 58.9
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 9.4e-64 247.3 158 74.7
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 7.5e-61 237.7 173 62.4
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 1.7e-60 236.5 187 66.8
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 7.0e-59 231.1 187 64.2
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.9e-58 228.0 124 88.7
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.4e-51 206.8 103 94.2
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.8e-51 206.5 127 73.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 2.0e-50 203.0 167 56.3
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.2e-49 199.5 103 90.3
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.5e-48 196.1 98 92.9
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.4e-46 190.3 106 85.8
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.8e-46 189.9 102 87.3
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.3e-46 189.5 175 51.4
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 9.8e-45 184.1 181 56.9
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 2.9e-41 172.6 98 78.6
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 8.3e-36 154.5 85 88.2
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 4.4e-29 132.1 142 54.2
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.9e-20 102.8 68 67.6
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 3.5e-18 95.9 52 94.2
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 7.8e-18 94.7 52 90.4
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.9e-16 90.1 49 91.8
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 6.8e-14 81.6 41 92.7
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 2.6e-13 79.7 45 86.7
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 2.9e-12 76.3 47 78.7
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.7e-12 75.9 41 82.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 3.2e-11 72.8 39 79.5
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 3.2e-11 72.8 70 58.6
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.1e-11 71.6 68 54.4


User provided reference genes

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