Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.2e-196 689.5 321 100.0
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 8.9e-163 577.0 319 80.6
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 5.8e-162 574.3 319 79.9
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 5.4e-160 567.8 318 80.2
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 7.0e-160 567.4 319 80.6
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 7.8e-159 563.9 318 80.2
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 6.6e-158 560.8 318 77.7
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.1e-157 560.1 319 79.3
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.5e-157 559.7 322 78.0
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 4.3e-157 558.1 319 78.7
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 4.3e-157 558.1 319 78.7
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 4.7e-156 554.7 319 78.1
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 4.7e-156 554.7 319 79.6
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 8.1e-156 553.9 319 77.7
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.1e-156 553.9 319 78.4
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 1.4e-155 553.1 319 75.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 3.1e-155 552.0 319 76.5
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 8.9e-155 550.4 318 77.4
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 4.4e-154 548.1 319 77.7
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 7.5e-154 547.4 308 76.6
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.1e-152 543.5 319 77.1
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.4e-152 543.1 319 75.2
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.4e-152 543.1 319 76.5
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 7.1e-152 540.8 320 76.6
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 9.2e-152 540.4 319 75.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.2e-152 540.4 321 76.0
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 1.6e-151 539.7 318 75.5
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.7e-151 538.9 319 75.9
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.5e-151 538.5 319 77.1
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.6e-151 538.1 321 75.7
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 4.6e-151 538.1 316 77.2
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 2.3e-150 535.8 320 75.0
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.0e-150 535.4 319 74.6
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 3.9e-150 535.0 319 74.9
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 6.6e-150 534.3 318 75.2
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 6.6e-150 534.3 317 75.7
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.9e-149 532.7 319 73.7
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 3.3e-149 531.9 319 73.7
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 4.3e-149 531.6 321 74.8
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 7.3e-149 530.8 315 74.9
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.3e-149 530.8 320 73.8
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 7.3e-149 530.8 320 75.0
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.2e-148 530.0 319 74.9
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 2.1e-148 529.3 321 74.1
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.8e-148 528.9 319 75.2
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.6e-148 528.5 319 74.9
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 3.6e-148 528.5 318 74.5
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 2.4e-147 525.8 318 74.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 2.4e-147 525.8 319 74.3
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.4e-147 525.8 311 74.9
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 3.1e-147 525.4 320 75.0
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 4.0e-147 525.0 319 72.1
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.8e-147 524.2 317 73.5
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 8.9e-147 523.9 321 73.2
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 8.9e-147 523.9 320 75.0
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 1.2e-146 523.5 321 73.5
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.0e-146 522.7 313 74.8
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 2.0e-146 522.7 307 75.9
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 2.6e-146 522.3 319 72.1
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 3.4e-146 521.9 319 72.1
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 4.4e-146 521.5 318 73.3
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 5.8e-146 521.2 321 74.1
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 5.8e-146 521.2 321 73.5
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 9.9e-146 520.4 314 73.6
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.3e-145 520.0 321 73.2
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.7e-145 519.6 320 73.4
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 6.4e-145 517.7 318 72.0
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.4e-145 517.3 305 75.7
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 8.4e-145 517.3 319 73.7
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.1e-144 516.9 321 72.6
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 1.4e-144 516.5 320 73.1
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 3.2e-144 515.4 319 72.7
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 5.4e-144 514.6 321 70.1
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 5.4e-144 514.6 320 73.8
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.6e-143 513.1 317 74.4
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 2.1e-143 512.7 318 74.2
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.1e-143 512.7 313 72.5
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 2.7e-143 512.3 307 75.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 2.7e-143 512.3 308 73.1
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.5e-143 511.9 313 72.5
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 3.5e-143 511.9 319 71.5
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 4.6e-143 511.5 318 70.8
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 6.0e-143 511.1 310 73.5
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 7.8e-143 510.8 321 72.3
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 3.0e-142 508.8 319 70.5
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 3.0e-142 508.8 306 74.8
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 3.9e-142 508.4 320 71.9
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 5.1e-142 508.1 321 70.7
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 8.7e-142 507.3 315 71.4
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.9e-141 506.1 321 72.6
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 3.3e-141 505.4 306 75.2
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.3e-141 505.0 318 70.8
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 7.3e-141 504.2 319 71.5
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.2e-140 503.4 318 69.5
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 1.2e-140 503.4 306 70.9
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.8e-140 502.3 321 69.8
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.6e-140 501.9 306 72.2
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.5e-138 496.5 314 69.4
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.5e-138 496.5 301 74.8
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 7.6e-138 494.2 313 70.3
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 9.9e-138 493.8 301 74.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 3.2e-136 488.8 318 69.2
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.4e-136 488.0 318 69.2
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 7.1e-136 487.6 303 69.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 2.1e-135 486.1 303 69.3
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 3.5e-135 485.3 303 69.3
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.5e-135 485.3 295 72.2
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 7.8e-135 484.2 303 70.0
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 7.8e-135 484.2 303 69.0
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.0e-134 483.8 318 65.1
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 3.0e-134 482.3 304 70.1
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 3.9e-134 481.9 303 68.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 3.9e-134 481.9 304 70.1
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.5e-133 479.9 304 70.1
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 1.5e-133 479.9 303 69.0
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.9e-133 479.6 319 68.7
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.3e-132 476.9 302 67.9
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.3e-132 476.9 304 70.1
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-130 470.3 321 68.5
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.6e-130 469.2 305 65.9
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.6e-130 469.2 318 66.0
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 4.5e-130 468.4 318 63.5
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 2.5e-125 452.6 321 65.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 6.2e-124 448.0 304 66.8
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 8.1e-124 447.6 317 63.1
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 8.1e-124 447.6 273 72.9
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 9.9e-122 440.7 290 67.9
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.9e-121 438.3 294 68.7
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.0e-118 430.6 307 60.6
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 5.1e-118 428.3 319 60.8
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 6.7e-118 427.9 318 60.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.8e-115 419.9 317 63.1
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.8e-115 419.9 317 63.1
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.0e-115 418.7 306 60.1
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 9.0e-115 417.5 307 63.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 3.9e-110 402.1 309 57.6
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 5.3e-107 391.7 217 78.8
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 9.0e-107 391.0 305 57.0
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 8.5e-105 384.4 225 73.3
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.9e-104 383.3 294 63.3
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.4e-96 357.1 307 55.4
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.5e-90 337.0 309 51.5
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.0e-85 320.1 274 58.0
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 4.2e-72 275.8 181 70.2
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.1e-71 273.5 308 46.4
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.5e-64 248.8 259 50.2
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.6e-55 219.5 134 76.1
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.0e-50 203.8 126 66.7
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.6e-47 193.0 113 75.2
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 5.2e-46 189.1 318 34.6
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 8.6e-41 171.8 315 33.3
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 1.6e-34 151.0 245 38.4
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 6.2e-31 139.0 351 29.3
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.2e-27 126.3 96 57.3
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.5e-16 90.5 59 71.2
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 3.4e-13 80.1 74 56.8


User provided reference genes

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