Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.3e-57 225.3 110 100.0
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.9e-48 195.7 110 85.5
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.7e-36 156.0 113 65.5
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.7e-36 156.0 113 65.5
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.9e-36 154.5 113 64.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.1e-35 151.4 113 66.4
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 2.7e-34 148.7 113 63.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.7e-34 148.7 113 64.6
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.5e-34 148.3 114 65.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.8e-34 147.1 109 67.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.0e-33 146.7 107 65.4
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.3e-33 145.6 109 67.0
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.3e-33 145.6 115 63.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.9e-33 144.8 105 64.8
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.9e-32 142.5 111 63.1
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.3e-32 141.4 114 62.3
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.3e-32 140.6 113 63.7
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 9.5e-32 140.2 112 62.5
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.6e-31 139.4 116 61.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.8e-31 138.7 113 61.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.6e-31 138.3 116 62.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 6.2e-31 137.5 111 62.2
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 8.1e-31 137.1 114 60.5
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 5.2e-30 134.4 118 60.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.6e-29 132.1 116 61.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 9.9e-29 130.2 114 62.3
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.4e-27 126.3 114 57.0
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.9e-27 125.9 115 58.3
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.9e-27 125.9 115 58.3
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.1e-27 124.8 115 56.5
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 9.2e-27 123.6 115 58.3
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 9.2e-27 123.6 121 55.4
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.1e-26 122.5 121 56.2
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.0e-26 120.9 114 57.0
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 7.8e-26 120.6 112 60.7
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-25 119.8 114 57.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-25 119.0 115 56.5
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 3.9e-25 118.2 114 56.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-25 117.5 114 56.1
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 6.6e-25 117.5 106 62.3
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.6e-25 117.1 114 56.1
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.5e-24 116.3 115 54.8
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.5e-24 115.5 111 54.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 5.6e-24 114.4 119 55.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.6e-24 114.4 116 53.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 7.3e-24 114.0 117 53.0
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.6e-23 112.8 113 52.2
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 4.7e-23 111.3 109 53.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.4e-22 109.8 113 51.3
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.8e-22 109.4 123 50.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 3.1e-22 108.6 108 51.9
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.2e-22 107.8 111 50.5
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.8e-22 107.5 114 51.8
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.8e-22 107.5 104 53.8
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 6.8e-22 107.5 105 54.3
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 8.9e-22 107.1 110 50.0
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.2e-21 106.7 125 49.6
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.0e-21 105.9 116 50.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.4e-21 105.1 110 53.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.4e-21 105.1 110 53.6
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.4e-21 104.8 110 49.1
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 5.8e-21 104.4 108 50.0
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.6e-21 104.0 106 50.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 7.6e-21 104.0 108 54.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.2e-20 102.4 114 50.0
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.9e-20 102.1 113 50.4
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 3.8e-20 101.7 114 48.2
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 8.4e-20 100.5 119 47.9
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.1e-19 100.1 107 51.4
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.4e-19 99.0 115 47.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 2.4e-19 99.0 109 50.5
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.4e-19 99.0 111 51.4
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.1e-19 98.2 111 51.4
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.2e-19 97.1 111 47.7
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.2e-18 96.7 113 49.6
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 4.6e-18 94.7 117 45.3
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.0e-17 93.6 112 46.4
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.0e-17 93.6 113 48.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.3e-17 93.2 98 48.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-17 93.2 105 52.4
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.7e-17 92.8 110 48.2
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-17 92.4 103 54.4
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.0e-17 92.0 118 44.9
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.0e-17 92.0 118 44.9
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.0e-17 92.0 118 44.9
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.9e-17 91.7 105 50.5
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 8.7e-17 90.5 117 43.6
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-16 90.1 115 49.6
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.5e-16 89.7 110 49.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.5e-16 89.7 105 51.4
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.9e-16 89.4 109 44.0
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.5e-16 89.0 113 46.0
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.6e-16 87.8 108 47.2
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.6e-16 87.8 108 47.2
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 9.6e-16 87.0 72 62.5
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-15 86.3 103 45.6
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.1e-15 85.9 114 47.4
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.8e-15 85.5 106 46.2
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.7e-15 84.7 113 43.4
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 8.1e-15 84.0 123 40.7
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.4e-14 83.2 113 39.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.1e-14 82.0 112 46.4
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.1e-14 82.0 110 43.6
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.0e-14 81.6 126 43.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 5.2e-14 81.3 123 41.5
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 9.0e-14 80.5 100 43.0
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 9.0e-14 80.5 109 44.0
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.2e-13 80.1 109 44.0
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.2e-13 80.1 109 44.0
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.5e-13 79.7 127 39.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.4e-13 78.2 114 41.2
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.4e-13 78.2 109 43.1
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 7.6e-13 77.4 110 41.8
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.9e-13 77.0 110 40.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-12 76.6 110 40.0
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-12 76.3 114 40.4
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 2.2e-12 75.9 108 46.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.9e-12 75.5 108 41.7
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 4.9e-12 74.7 110 40.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.4e-12 74.3 132 36.4
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-11 73.6 115 39.1
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.4e-11 71.2 107 41.1
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 7.1e-11 70.9 113 38.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.6e-10 69.7 107 37.4
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-10 69.7 112 42.0
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.6e-10 69.7 112 42.0
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 1.6e-10 69.7 107 43.9
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 2.1e-10 69.3 115 40.0
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.5e-10 68.6 105 41.9
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.5e-10 68.6 111 44.1
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 4.6e-10 68.2 97 40.2
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.3e-09 65.9 108 36.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.3e-09 65.9 113 36.3
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.0e-09 65.5 118 34.7
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 5.1e-09 64.7 101 38.6
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 1.1e-08 63.5 86 41.9
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-08 63.5 114 38.6
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-08 63.5 114 35.1
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.5e-08 63.2 111 38.7
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 2.5e-08 62.4 79 48.1
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 3.3e-08 62.0 82 43.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.6e-08 61.2 105 36.2
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 7.3e-08 60.8 109 35.8
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 2.4e-06 55.8 96 38.5
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 5.3e-06 54.7 114 34.2
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.3e-06 54.7 57 49.1


User provided reference genes

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