Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.4e-119 433.0 217 100.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.7e-88 328.6 216 76.9
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.2e-47 192.6 206 52.9
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.9e-45 185.7 205 48.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.5e-44 183.0 205 48.8
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.3e-43 180.6 207 48.8
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 2.8e-43 179.5 214 48.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.8e-43 179.5 207 48.3
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.1e-42 177.6 227 46.3
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.4e-42 177.2 209 47.4
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.8e-42 176.8 206 47.6
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.0e-42 175.6 213 46.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-41 174.1 186 51.1
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.6e-41 172.9 208 48.1
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 3.4e-41 172.6 202 49.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 3.8e-40 169.1 192 47.9
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 9.3e-39 164.5 156 55.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 9.3e-39 164.5 190 51.1
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 6.0e-38 161.8 199 45.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 7.9e-38 161.4 173 47.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.3e-37 159.8 214 45.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.9e-37 159.1 206 44.7
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.1e-36 157.5 198 46.5
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.9e-36 156.8 205 43.4
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.9e-36 156.8 191 45.5
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 7.4e-36 154.8 230 38.7
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.6e-35 153.7 172 45.9
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.6e-35 153.7 190 46.3
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.8e-35 152.9 181 46.4
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 3.7e-35 152.5 204 45.6
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 6.2e-35 151.8 191 45.5
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.4e-34 150.6 170 44.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.1e-34 149.4 206 43.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.1e-34 149.4 206 43.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.0e-34 149.1 172 44.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.2e-33 147.5 201 45.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.5e-33 147.1 177 45.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 7.6e-33 144.8 191 42.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 7.6e-33 144.8 198 45.5
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.3e-32 144.1 163 46.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 3.8e-32 142.5 161 47.8
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.1e-31 141.0 164 48.8
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.4e-31 140.6 203 45.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.9e-31 140.2 152 50.0
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 7.1e-31 138.3 203 42.4
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 7.1e-31 138.3 162 44.4
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 9.3e-31 137.9 164 46.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.5e-30 136.0 162 45.7
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.5e-30 136.0 143 49.7
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 6.0e-30 135.2 203 43.3
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.3e-29 134.0 161 45.3
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.8e-29 133.7 143 49.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.3e-29 133.3 192 41.1
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 2.3e-29 133.3 204 43.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 3.9e-29 132.5 209 41.6
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.7e-29 131.7 152 48.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.7e-29 131.7 152 48.7
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 8.7e-29 131.3 193 41.5
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.1e-28 131.0 181 42.5
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.1e-28 131.0 150 48.7
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.5e-28 130.6 189 38.6
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.5e-28 130.6 206 38.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 3.3e-28 129.4 204 44.1
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.7e-28 128.6 185 38.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 9.6e-28 127.9 150 45.3
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.3e-27 127.5 207 39.6
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.6e-27 127.1 171 39.8
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.8e-27 126.3 199 37.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.8e-27 125.6 150 45.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 6.3e-27 125.2 219 37.9
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 6.3e-27 125.2 190 41.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 8.2e-27 124.8 180 40.6
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.8e-26 123.6 178 39.3
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 6.9e-26 121.7 204 37.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 9.0e-26 121.3 137 47.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.5e-25 120.6 161 42.9
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.5e-25 119.0 135 46.7
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 7.6e-25 118.2 137 44.5
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.6e-25 118.2 200 37.0
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.0e-24 117.9 176 39.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 5.0e-24 115.5 162 41.4
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 6.5e-24 115.2 197 40.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.1e-23 114.4 151 42.4
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.4e-23 114.0 156 41.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.9e-23 113.6 203 36.0
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 3.2e-23 112.8 183 39.3
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 3.2e-23 112.8 202 37.6
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 3.2e-23 112.8 157 43.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 4.2e-23 112.5 147 39.5
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.2e-23 112.5 163 41.1
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 4.2e-23 112.5 175 40.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 9.3e-23 111.3 162 41.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.2e-22 110.9 155 38.7
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.2e-22 110.9 160 39.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.6e-22 110.5 187 36.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.6e-22 110.5 155 38.7
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.6e-22 110.5 159 43.4
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 2.1e-22 110.2 192 36.5
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-22 109.8 184 37.0
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 3.6e-22 109.4 201 36.3
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.6e-22 109.4 200 34.0
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.6e-22 109.0 145 44.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.6e-22 109.0 156 39.1
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.6e-22 109.0 156 39.1
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 6.1e-22 108.6 173 39.9
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 7.9e-22 108.2 155 37.4
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 7.9e-22 108.2 204 35.3
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 7.9e-22 108.2 147 42.9
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.0e-21 107.8 151 41.7
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-21 107.5 155 38.7
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-21 107.5 190 35.8
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.8e-21 107.1 155 42.6
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.3e-21 106.7 180 35.0
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 8.7e-21 104.8 157 38.2
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.1e-20 104.4 162 39.5
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-20 104.4 186 36.0
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-20 102.8 148 37.2
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-20 102.8 148 37.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.3e-20 102.4 156 39.1
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.3e-20 102.4 156 39.1
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.4e-20 101.7 158 38.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 9.7e-20 101.3 195 34.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-19 100.9 156 38.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-19 100.9 156 37.8
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-19 100.9 156 38.5
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-19 99.8 185 36.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.8e-19 99.8 199 34.7
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-19 99.8 145 38.6
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 3.7e-19 99.4 185 35.1
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.7e-19 99.4 186 36.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.7e-19 99.4 113 46.0
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 4.8e-19 99.0 157 37.6
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.8e-19 99.0 153 37.3
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-18 97.4 147 38.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.4e-18 97.4 160 36.9
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.8e-18 97.1 190 33.7
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.1e-18 96.3 157 36.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 3.1e-18 96.3 186 36.0
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-18 96.3 148 34.5
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-18 96.3 186 36.0
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.1e-18 96.3 148 34.5
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.1e-18 96.3 185 35.7
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.1e-18 96.3 155 37.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 4.1e-18 95.9 157 36.3
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.1e-18 95.9 144 39.6
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-18 95.5 154 33.8
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 6.9e-18 95.1 157 36.3
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 6.9e-18 95.1 156 39.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-17 94.4 148 35.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.2e-17 94.4 157 36.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 3.4e-17 92.8 186 35.5
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.4e-17 92.8 154 35.7
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 7.7e-17 91.7 142 38.0
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.0e-16 91.3 122 41.0
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.3e-16 90.9 154 36.4
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.3e-16 90.9 212 30.2
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.2e-16 90.1 192 32.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 2.9e-16 89.7 107 43.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.8e-16 89.4 159 34.0
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.0e-16 89.0 159 35.8
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 5.0e-16 89.0 159 34.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.5e-16 88.6 107 42.1
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 8.5e-16 88.2 172 32.6
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 8.5e-16 88.2 172 32.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.1e-15 87.8 107 42.1
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-15 87.4 172 32.6
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-15 87.4 172 32.6
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-15 87.4 172 32.6
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.4e-15 87.4 111 46.8
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.2e-15 86.3 108 42.6
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-15 86.3 172 32.6
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.2e-15 86.3 111 44.1
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-15 85.9 193 31.6
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.2e-14 84.3 181 30.9
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.1e-14 83.6 159 32.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.6e-14 82.4 148 34.5
Cpa.g.sc27.233 Carica papaya HOM05D003761 ORTHO05D004412 3.4e-09 66.2 81 45.7
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 4.5e-09 65.9 59 55.9
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.8e-08 62.8 97 39.2
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 5.0e-08 62.4 109 35.8
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 6.5e-08 62.0 101 35.6
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 9.4e-07 58.2 91 37.4


User provided reference genes

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