Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.7e-271 938.7 470 100.0
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.1e-198 696.8 464 77.6
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 7.6e-195 684.1 473 74.6
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 4.9e-194 681.4 451 78.5
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 6.4e-194 681.0 451 78.3
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 6.6e-191 671.0 480 72.7
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 7.3e-190 667.5 430 79.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.2e-189 666.8 468 75.0
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 4.7e-189 664.8 469 73.3
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.1e-188 663.7 473 73.4
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 5.2e-188 661.4 466 74.0
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.5e-187 659.8 472 73.3
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.6e-187 659.1 430 78.6
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.6e-187 659.1 473 72.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 7.6e-187 657.5 408 81.4
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 4.9e-186 654.8 430 77.2
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 1.1e-185 653.7 453 75.1
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.1e-185 651.0 462 73.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.6e-184 649.8 467 73.2
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 6.0e-184 647.9 464 73.1
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 7.8e-184 647.5 477 71.1
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 5.1e-183 644.8 478 71.8
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 1.5e-182 643.3 508 69.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.5e-182 642.5 469 71.0
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 8.1e-181 637.5 468 70.3
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.1e-180 637.1 406 78.1
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 3.1e-180 635.6 472 71.2
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 9.0e-180 634.0 405 79.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 2.6e-179 632.5 395 80.5
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.4e-177 625.9 476 69.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 2.4e-177 625.9 426 75.4
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 5.4e-177 624.8 421 75.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.6e-176 621.7 410 76.1
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 6.0e-176 621.3 410 76.1
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 8.7e-175 617.5 441 72.1
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 8.7e-175 617.5 465 71.0
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 8.7e-175 617.5 495 67.9
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 4.3e-174 615.1 395 77.7
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 1.3e-173 613.6 418 75.4
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.6e-173 613.2 468 69.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 2.8e-173 612.5 410 75.9
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.7e-173 612.1 447 72.3
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 4.8e-173 611.7 445 71.7
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.4e-172 609.4 405 76.8
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 9.0e-172 607.4 437 72.3
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 3.4e-171 605.5 410 75.9
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 4.5e-171 605.1 472 68.6
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.3e-170 603.6 451 70.3
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.3e-170 603.6 447 71.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.3e-170 603.6 447 71.6
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 3.8e-170 602.1 442 69.7
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 4.9e-170 601.7 402 75.9
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 6.4e-170 601.3 474 67.5
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.1e-169 600.5 384 78.4
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.4e-169 600.1 451 71.4
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 7.1e-169 597.8 394 76.4
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 7.1e-169 597.8 481 67.2
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 9.3e-169 597.4 468 67.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 6.0e-168 594.7 419 72.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.3e-167 593.6 438 72.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.8e-167 593.2 448 69.0
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 9.6e-166 587.4 401 76.8
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 4.8e-165 585.1 399 75.4
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 3.4e-163 578.9 443 68.4
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 3.8e-162 575.5 607 56.2
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 6.5e-162 574.7 428 71.5
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.2e-161 572.4 389 76.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.1e-158 563.9 362 79.3
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.9e-158 563.1 421 70.8
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 4.3e-158 562.0 483 63.4
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 4.3e-158 562.0 404 72.3
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.5e-155 552.0 397 71.8
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 5.9e-155 551.6 465 64.5
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 2.2e-154 549.7 442 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 8.5e-154 547.7 415 67.7
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.9e-153 546.6 497 62.2
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.5e-147 526.9 427 65.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.6e-147 526.2 355 78.3
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.3e-146 523.9 479 59.9
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 5.5e-145 518.5 471 62.0
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 9.4e-145 517.7 469 61.8
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 5.1e-143 511.9 406 63.3
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.7e-142 508.4 455 62.9
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.4e-140 503.8 429 62.9
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.8e-140 503.4 366 71.6
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.8e-140 503.4 406 64.3
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-139 500.4 461 61.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 2.1e-136 490.0 423 64.3
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 5.9e-131 471.9 306 78.8
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 4.2e-121 439.1 353 67.4
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.1e-120 436.8 371 66.0
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 5.9e-115 418.7 417 51.6
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.6e-112 410.6 262 79.0
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.3e-111 406.8 314 70.7
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 5.7e-110 402.1 407 53.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 7.5e-110 401.7 262 76.7
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.9e-106 389.8 471 47.8
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 5.6e-89 332.4 264 68.9
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.4e-84 317.8 540 40.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.2e-83 314.7 203 73.9
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.6e-80 303.1 266 68.0
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.8e-79 300.8 261 67.4
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.0e-74 285.0 261 67.0
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.3e-74 283.9 171 81.9
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.5e-73 281.2 185 73.5
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.9e-73 280.8 186 72.0
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.4e-71 273.9 191 69.6
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.3e-65 253.4 165 78.8
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 8.1e-64 248.8 155 80.0
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 5.3e-63 246.1 333 47.7
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.8e-61 240.0 221 61.1
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 2.1e-59 234.2 243 58.0
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 4.6e-59 233.0 256 54.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 4.6e-59 233.0 256 54.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 4.6e-59 233.0 256 54.7
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 4.3e-57 226.5 252 55.6
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.6e-56 224.6 176 68.2
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 9.0e-55 218.8 181 66.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.1e-52 211.8 165 63.0
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 3.3e-49 200.3 135 73.3
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.2e-43 181.8 127 70.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 7.4e-41 172.6 149 65.8
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.8e-37 160.2 129 68.2
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.0e-34 152.1 144 53.5
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.0e-34 150.6 92 80.4
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.5e-33 147.5 115 70.4
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 8.5e-29 132.5 105 65.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.2e-28 130.6 105 64.8
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 6.7e-26 122.9 82 74.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 8.8e-26 122.5 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 4.8e-24 116.7 124 54.8
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.2e-21 107.8 170 39.4
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 8.8e-18 95.9 175 39.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 3.7e-16 90.5 56 76.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.3e-16 89.7 87 57.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 2.4e-15 87.8 70 67.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 8.3e-08 62.8 81 46.9
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 3.1e-07 60.8 150 33.3
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 2.0e-06 58.2 54 53.7


User provided reference genes

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