Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.1e-262 909.4 452 100.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 4.4e-232 807.7 452 88.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 7.0e-198 694.1 448 75.7
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.6e-195 684.5 448 74.1
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 7.3e-195 684.1 450 74.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 3.7e-191 671.8 448 72.3
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.9e-190 669.5 446 73.1
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 5.4e-190 667.9 448 73.9
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 5.0e-188 661.4 448 72.3
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.5e-187 659.8 453 72.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 5.6e-187 657.9 439 73.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.6e-186 656.4 455 71.9
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 2.3e-185 652.5 448 71.7
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 8.9e-185 650.6 448 70.3
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.4e-184 648.7 448 71.2
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.9e-184 647.1 444 70.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-182 642.5 450 70.0
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.4e-182 642.5 450 70.4
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.2e-182 642.1 444 71.4
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-180 636.7 449 70.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-180 636.7 450 69.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.6e-180 634.4 449 70.4
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 7.3e-179 630.9 445 69.4
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 9.5e-179 630.6 456 68.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.1e-178 629.4 449 69.9
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.6e-178 628.6 454 68.5
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.7e-178 628.2 451 68.5
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 8.1e-178 627.5 449 69.0
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 8.1e-178 627.5 450 68.2
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 8.9e-177 624.0 442 68.6
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 8.9e-177 624.0 450 66.7
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.7e-175 619.8 451 67.6
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.7e-175 619.8 448 67.2
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.2e-175 619.4 451 67.6
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.2e-175 619.4 438 69.6
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.9e-175 619.0 451 67.6
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.9e-174 616.3 434 68.9
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.6e-173 613.2 450 68.9
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.6e-173 611.7 434 68.4
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-172 610.1 444 68.9
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 8.7e-172 607.4 419 73.5
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 8.7e-172 607.4 440 68.6
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.5e-171 606.7 433 68.6
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 7.3e-171 604.4 440 68.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.2e-170 603.6 450 66.9
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.8e-170 602.4 448 66.3
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.6e-170 602.1 435 68.5
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.7e-170 601.7 433 66.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.1e-169 600.5 404 74.0
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.8e-169 599.7 452 67.5
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 4.0e-169 598.6 443 67.0
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 4.0e-169 598.6 417 69.5
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 4.4e-168 595.1 451 65.2
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.3e-167 593.6 453 64.7
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.7e-167 593.2 439 66.3
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.9e-166 589.7 433 67.2
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.9e-166 589.7 450 64.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 9.3e-166 587.4 449 65.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 6.0e-165 584.7 437 66.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 3.0e-164 582.4 449 65.0
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 8.7e-164 580.9 431 65.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.5e-163 579.3 449 64.4
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.3e-163 578.6 449 63.7
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.6e-163 578.2 447 64.9
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 7.3e-163 577.8 451 64.3
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 9.6e-163 577.4 449 64.8
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 9.6e-163 577.4 449 63.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 3.1e-161 572.4 417 68.3
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.0e-161 572.0 448 63.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.0e-161 572.0 448 63.6
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 5.3e-161 571.6 448 64.5
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.0e-160 569.7 449 63.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 5.8e-160 568.2 465 62.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 7.6e-160 567.8 460 62.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.2e-159 566.2 456 62.9
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 3.8e-159 565.5 438 66.2
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.4e-158 562.8 434 65.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 9.3e-158 560.8 457 62.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 3.5e-157 558.9 450 64.4
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.3e-156 557.0 442 62.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.8e-156 556.6 435 65.1
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 8.7e-156 554.3 456 62.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.9e-155 553.1 452 62.4
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.5e-155 552.7 456 60.7
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.3e-155 552.0 454 61.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 7.4e-155 551.2 469 61.4
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.8e-154 549.3 439 62.4
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 6.2e-154 548.1 455 60.9
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 3.1e-153 545.8 439 64.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.3e-153 545.0 454 63.2
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.5e-152 543.5 431 62.9
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.0e-152 543.1 454 61.5
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.5e-152 542.0 454 63.0
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.8e-151 538.9 455 61.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-150 537.0 455 60.9
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 9.3e-150 534.3 434 59.4
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 4.6e-149 531.9 377 67.6
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.0e-148 530.8 385 69.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.8e-148 530.0 455 59.1
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.8e-148 530.0 455 59.8
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.8e-148 530.0 442 60.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.0e-148 529.3 452 59.5
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 3.0e-148 529.3 451 60.5
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.9e-148 528.9 350 72.0
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 6.7e-148 528.1 455 61.5
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 6.7e-148 528.1 455 61.5
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 8.7e-148 527.7 386 66.3
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.8e-145 520.0 350 70.6
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 9.0e-145 517.7 379 68.9
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.2e-144 517.3 379 66.2
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-144 516.9 438 62.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-144 516.9 438 62.1
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 3.5e-141 505.8 349 70.5
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.3e-140 503.1 426 62.0
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 6.7e-140 501.5 448 58.9
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 7.4e-139 498.0 448 55.6
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 6.9e-137 491.5 370 65.9
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 6.9e-137 491.5 448 55.6
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.9e-135 486.1 429 55.9
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.2e-134 482.6 450 57.8
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.7e-133 479.6 348 66.1
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.5e-131 473.0 360 64.7
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.7e-130 470.3 419 54.9
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 8.2e-130 468.0 319 71.2
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.3e-119 434.1 336 63.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.2e-117 427.6 372 59.1
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.5e-112 409.1 451 51.7
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.7e-108 395.2 386 54.9
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.2e-104 384.4 280 68.2
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.2e-104 384.4 280 68.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.7e-96 356.7 388 50.8
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.5e-94 350.9 389 47.8
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.5e-78 297.0 245 60.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 8.6e-71 271.9 188 70.7
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.8e-69 266.9 251 57.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.2e-66 257.3 391 42.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.1e-60 238.4 155 73.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.6e-56 224.6 171 65.5
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-53 214.9 263 48.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.2e-37 159.5 106 70.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 6.9e-36 156.0 154 53.9
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 3.4e-35 153.7 145 57.2
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 7.1e-33 146.0 109 68.8
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.5e-32 143.7 110 68.2
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 7.6e-27 125.9 99 56.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 4.3e-14 83.6 51 70.6
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.8e-07 61.6 108 38.0


User provided reference genes

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