Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 0.0e+00 1124.4 588 100.0
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.0e-265 919.8 590 82.7
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 3.6e-154 549.3 591 53.1
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 5.3e-145 518.8 596 52.9
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 3.4e-144 516.2 596 52.2
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 5.8e-144 515.4 590 52.2
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 1.7e-143 513.8 596 51.3
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 1.1e-139 501.1 594 52.2
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 3.7e-138 496.1 595 50.6
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 9.0e-137 491.5 592 49.7
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.7e-135 487.3 596 49.0
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 2.2e-135 486.9 606 49.3
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.1e-134 484.6 596 48.8
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.9e-134 483.8 603 48.6
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 6.0e-133 478.8 618 48.7
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 6.7e-132 475.3 595 51.9
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 9.6e-131 471.5 596 49.3
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.3e-130 471.1 596 48.5
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 3.7e-130 469.5 645 47.3
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.0e-129 466.1 600 49.8
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 4.0e-129 466.1 600 49.8
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.2e-128 464.5 629 46.9
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.8e-124 450.7 600 47.2
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.3e-124 450.3 590 48.8
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.3e-123 446.0 592 49.0
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 4.8e-122 442.6 600 46.8
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 8.2e-122 441.8 599 47.9
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.1e-121 441.4 599 46.2
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 3.4e-120 436.4 607 47.3
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 5.0e-119 432.6 594 47.8
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 1.9e-118 430.6 592 47.8
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 5.5e-118 429.1 601 46.8
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 3.9e-116 422.9 593 45.9
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.3e-114 417.9 593 46.7
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.1e-113 414.8 602 45.7
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 3.8e-111 406.4 591 46.7
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 2.5e-110 403.7 593 46.9
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 6.1e-109 399.1 601 45.3
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 6.1e-109 399.1 657 42.6
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 7.9e-109 398.7 600 45.3
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 3.0e-108 396.7 617 44.2
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 8.8e-108 395.2 589 45.0
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 2.0e-107 394.0 608 44.4
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 7.4e-107 392.1 613 44.2
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 9.7e-107 391.7 609 45.3
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.7e-106 391.0 618 41.6
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.3e-106 389.0 611 44.5
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 8.2e-106 388.7 596 46.1
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 3.1e-105 386.7 613 42.9
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 5.3e-105 386.0 605 44.0
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 7.0e-105 385.6 609 42.7
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 3.5e-104 383.3 610 43.0
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 6.5e-103 379.0 598 45.3
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.2e-101 374.8 615 42.3
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 3.6e-101 373.2 606 43.2
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 2.0e-99 367.5 503 47.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 3.3e-99 366.7 609 41.2
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 6.3e-98 362.5 609 44.7
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.1e-97 360.1 591 42.3
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 1.5e-94 351.3 616 41.2
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 5.5e-94 349.4 589 41.9
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 7.2e-94 349.0 595 42.7
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 9.4e-94 348.6 493 46.2
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 3.6e-93 346.7 602 41.5
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.0e-92 345.1 655 39.5
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.8e-92 342.4 554 41.5
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 6.8e-92 342.4 615 40.2
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 6.8e-92 342.4 411 50.4
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 2.8e-90 337.0 440 47.3
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 2.8e-90 337.0 594 41.4
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 4.5e-88 329.7 615 41.5
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.0e-87 328.6 612 42.6
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 5.0e-87 326.2 608 43.3
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.3e-84 317.4 616 39.0
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 6.8e-84 315.8 629 38.2
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 8.8e-84 315.5 594 38.9
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.5e-83 314.7 593 39.0
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 1.7e-82 311.2 612 39.4
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 8.3e-82 308.9 604 42.5
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-81 308.5 521 40.9
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 4.5e-80 303.1 613 39.5
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.5e-78 298.1 602 38.5
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 4.2e-78 296.6 381 49.1
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 8.0e-77 292.4 485 42.5
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 6.8e-76 289.3 371 49.3
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 7.5e-75 285.8 611 36.3
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 9.8e-75 285.4 580 41.9
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 2.2e-74 284.3 580 42.1
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.1e-73 282.0 595 39.2
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 7.8e-72 275.8 597 38.4
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 8.6e-71 272.3 599 38.4
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 1.1e-70 271.9 593 40.5
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 4.3e-70 270.0 595 37.3
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 9.5e-70 268.9 595 37.8
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.2e-69 268.5 594 37.5
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 2.1e-69 267.7 595 37.6
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 3.6e-69 266.9 602 39.2
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.0e-68 265.4 613 37.4
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.4e-68 265.0 613 37.2
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.3e-68 264.2 595 37.3
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 5.8e-67 259.6 579 37.3
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 1.3e-66 258.5 613 38.3
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 2.2e-66 257.7 598 37.8
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.2e-66 257.7 592 37.0
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 3.7e-66 256.9 586 36.9
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.9e-65 254.6 598 37.3
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.7e-64 250.8 560 37.0
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.0e-63 248.8 637 34.9
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 6.6e-63 246.1 675 34.1
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.3e-60 237.7 600 38.7
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.1e-60 237.3 424 41.3
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 2.9e-58 230.7 635 32.4
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 2.4e-57 227.6 732 32.2
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.7e-56 224.2 609 35.0
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 2.9e-50 204.1 398 38.4
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 4.6e-48 196.8 367 38.7
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 6.0e-48 196.4 599 31.2
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.9e-46 191.4 424 37.0
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 5.6e-46 189.9 374 36.4
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 3.5e-40 170.6 201 52.7
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 6.0e-40 169.9 609 29.6
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 2.1e-37 161.4 413 34.6
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-34 152.1 186 50.5
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.2e-32 145.6 589 29.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 2.8e-29 134.4 680 33.5
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 8.4e-26 122.9 108 60.2
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 3.2e-25 120.9 594 29.5
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 7.4e-22 109.8 90 61.1
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 2.8e-21 107.8 197 40.1
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-15 89.0 207 34.3
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 1.8e-15 88.6 118 44.1
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.9e-12 76.6 80 55.0
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 1.2e-08 65.9 328 28.4
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.5e-08 64.3 661 21.3
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.3e-07 61.6 306 32.7
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 3.3e-06 57.8 265 27.9
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 4.3e-06 57.4 49 59.2


User provided reference genes

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