Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 0.0e+00 1284.2 633 100.0
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 2.5e-209 732.6 583 63.6
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 5.8e-206 721.5 585 63.8
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 3.2e-204 715.7 588 63.4
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 8.1e-200 701.0 592 60.1
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 5.2e-199 698.4 587 60.6
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.0e-198 696.4 583 60.7
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.7e-197 693.3 583 60.0
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.1e-196 690.6 589 60.4
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.4e-196 690.3 591 60.2
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.2e-195 687.2 588 60.9
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 7.8e-195 684.5 587 61.3
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 9.5e-193 677.6 587 60.3
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 5.2e-191 671.8 585 60.7
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 8.4e-189 664.5 579 61.7
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 8.6e-186 654.4 598 58.0
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 8.6e-186 654.4 559 59.9
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.9e-185 653.3 581 57.7
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 7.3e-185 651.4 593 58.3
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 1.1e-183 647.5 588 56.8
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 1.8e-183 646.7 580 58.1
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 2.4e-183 646.4 581 57.1
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 3.1e-183 646.0 581 58.0
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 1.5e-182 643.7 615 56.3
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 4.4e-182 642.1 586 56.7
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.7e-181 640.2 594 56.9
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 2.9e-181 639.4 621 55.6
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.9e-180 636.7 601 56.1
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 2.4e-180 636.3 600 57.0
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.0e-178 630.9 582 56.2
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 3.0e-178 629.4 584 57.2
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 1.5e-177 627.1 585 56.8
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.3e-176 624.0 584 55.5
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 6.2e-176 621.7 582 55.7
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 8.1e-176 621.3 591 54.8
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 6.9e-175 618.2 587 55.5
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 4.4e-174 615.5 590 55.3
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 5.8e-174 615.1 581 55.1
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 3.2e-172 609.4 581 55.1
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 7.1e-172 608.2 588 55.1
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 1.2e-171 607.4 582 55.5
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.6e-171 607.1 583 55.2
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 2.7e-171 606.3 644 50.6
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 3.5e-171 605.9 581 54.7
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 4.6e-171 605.5 587 53.8
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 1.3e-170 604.0 584 54.3
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.7e-170 603.6 588 53.9
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 6.6e-170 601.7 644 50.5
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 1.1e-169 600.9 604 53.8
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 4.3e-169 599.0 529 60.1
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.3e-168 597.4 525 58.9
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 1.1e-167 594.3 595 53.1
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 1.4e-167 594.0 581 54.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 5.3e-167 592.0 582 54.1
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 7.6e-166 588.2 601 52.6
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 3.2e-164 582.8 583 52.3
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 4.2e-164 582.4 580 52.9
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.1e-163 580.1 592 51.5
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 1.0e-162 577.8 648 50.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.3e-162 577.4 588 51.7
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 1.4e-159 567.4 591 51.4
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 2.6e-158 563.1 544 58.1
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 1.9e-156 557.0 530 56.0
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 3.9e-154 549.3 595 50.8
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 2.4e-151 540.0 594 50.2
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 2.0e-150 537.0 592 49.0
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 2.1e-147 526.9 612 48.4
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 2.7e-147 526.6 399 64.7
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 7.9e-147 525.0 536 52.8
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 5.1e-146 522.3 551 51.4
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 6.5e-141 505.4 549 50.6
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 5.1e-138 495.7 586 47.8
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 5.7e-137 492.3 527 52.4
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 2.7e-131 473.4 547 48.3
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.4e-130 471.1 377 63.4
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 5.0e-117 426.0 611 42.1
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.5e-113 412.1 282 73.0
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 9.8e-113 411.8 436 50.2
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 9.8e-113 411.8 597 40.2
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 8.5e-109 398.7 599 38.1
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 7.2e-108 395.6 349 55.9
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 4.0e-106 389.8 421 52.5
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 1.3e-104 384.8 574 39.7
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 1.5e-100 371.3 278 66.5
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 4.1e-95 353.2 400 52.0
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.4e-90 338.2 389 48.6
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 3.2e-87 327.0 468 41.5
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.6e-86 324.7 295 55.9
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 1.2e-78 298.5 213 67.6
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 1.1e-74 285.4 283 53.0
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 7.1e-71 272.7 467 39.6
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 9.6e-68 262.3 270 55.2
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 9.3e-55 219.2 239 50.6
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.7e-54 217.6 236 51.3
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 3.5e-46 190.7 175 60.0
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.3e-43 182.2 192 56.2
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 1.8e-42 178.3 123 66.7
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 4.2e-39 167.2 101 71.3
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.6e-38 163.7 222 44.6
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.6e-38 163.7 222 44.6
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.5e-36 158.7 117 58.1
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 4.3e-36 157.1 245 40.4
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.4e-31 142.1 217 39.6
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 3.9e-29 134.0 100 62.0
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 1.3e-24 119.0 147 48.3
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 1.7e-19 102.1 158 40.5
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.8e-11 74.7 72 56.9
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 4.8e-11 73.9 164 33.5
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 1.1e-07 62.8 179 26.8


User provided reference genes

Program Settings