Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI38G0108 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 8.7e-174 614.0 423 100.0
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 2.4e-123 446.4 426 68.1
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 4.5e-106 389.0 425 58.4
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 1.2e-13 82.0 177 32.2
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 2.6e-13 80.9 154 32.5
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 4.5e-13 80.1 181 30.4
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 5.5e-11 73.2 161 36.6
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 5.5e-11 73.2 89 42.7
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.2e-10 72.0 89 40.4
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.2e-10 72.0 438 24.4
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 1.6e-10 71.6 89 39.3
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 4.7e-10 70.1 99 39.4
Potri.004G055300 Populus trichocarpa HOM05D023908 ORTHO05D002944 4.7e-10 70.1 166 33.1
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 6.1e-10 69.7 167 30.5
FvH4_3g07930 Fragaria vesca HOM05D016724 ORTHO05D017903 6.1e-10 69.7 185 31.9
FAN11G3468 Fragaria x ananassa HOM05D016724 ORTHO05D017903 6.1e-10 69.7 185 31.9
FAN16G0791 Fragaria x ananassa HOM05D016724 ORTHO05D017903 6.1e-10 69.7 185 31.9
FAN21G3782 Fragaria x ananassa HOM05D016724 ORTHO05D017903 1.4e-09 68.6 186 31.7
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.3e-09 67.8 114 30.7
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 3.0e-09 67.4 172 31.4
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 3.9e-09 67.0 167 30.5
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 5.1e-09 66.6 167 32.3
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 6.7e-09 66.2 114 29.8
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 8.8e-09 65.9 59 49.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.1e-08 65.5 95 38.9
Lalb_Chr01g0006751 Lupinus albus HOM05D008023 ORTHO05D002944 1.1e-08 65.5 58 46.6
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 1.1e-08 65.5 59 50.8
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 2.0e-08 64.7 92 35.9
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.6e-08 64.3 127 36.2
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.3e-08 63.9 105 37.1
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 3.3e-08 63.9 147 30.6
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 3.3e-08 63.9 116 42.2
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 3.3e-08 63.9 95 35.8
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 3.3e-08 63.9 92 38.0
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.4e-08 63.5 93 36.6
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 5.7e-08 63.2 81 42.0
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 5.7e-08 63.2 59 47.5
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 5.7e-08 63.2 87 40.2
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 9.7e-08 62.4 166 32.5
QL05p046502 Quercus lobata HOM05D016724 ORTHO05D017903 9.7e-08 62.4 445 23.4
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.3e-07 62.0 59 47.5
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.7e-07 61.6 91 38.5
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 1.7e-07 61.6 91 38.5
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 1.7e-07 61.6 91 38.5
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.7e-07 61.6 174 30.5
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 2.2e-07 61.2 62 50.0
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 2.2e-07 61.2 62 50.0
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.2e-07 61.2 93 35.5
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 2.8e-07 60.8 70 40.0
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 2.8e-07 60.8 96 37.5
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 2.8e-07 60.8 166 30.7
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 2.8e-07 60.8 70 42.9
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 2.8e-07 60.8 94 35.1
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 3.7e-07 60.5 59 49.2
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 3.7e-07 60.5 73 42.5
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 3.7e-07 60.5 73 42.5
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 3.7e-07 60.5 59 47.5
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 3.7e-07 60.5 98 34.7
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 4.8e-07 60.1 89 40.4
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 4.8e-07 60.1 95 34.7
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 4.8e-07 60.1 92 33.7
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 4.8e-07 60.1 58 43.1
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.8e-07 60.1 93 34.4
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 4.8e-07 60.1 70 40.0
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 4.8e-07 60.1 60 45.0
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 6.3e-07 59.7 91 36.3
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 6.3e-07 59.7 68 48.5
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 6.3e-07 59.7 96 34.4
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 6.3e-07 59.7 70 40.0
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 6.3e-07 59.7 60 50.0
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 8.2e-07 59.3 93 34.4
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 8.2e-07 59.3 93 34.4
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 8.2e-07 59.3 93 34.4
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 8.2e-07 59.3 194 28.9
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 1.1e-06 58.9 73 41.1
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 1.1e-06 58.9 73 41.1
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.1e-06 58.9 93 34.4
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 1.1e-06 58.9 92 33.7
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 1.1e-06 58.9 75 37.3
RcHm_v2.0_Chr5g0010561 Rosa chinensis HOM05D016724 ORTHO05D017903 1.1e-06 58.9 102 38.2
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 1.1e-06 58.9 91 34.1
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.4e-06 58.5 59 42.4
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.4e-06 58.5 59 42.4
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 1.4e-06 58.5 60 50.0
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 1.4e-06 58.5 163 31.9
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 1.4e-06 58.5 51 49.0
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.4e-06 58.5 89 37.1
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.8e-06 58.2 59 42.4
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 1.8e-06 58.2 73 39.7
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 1.8e-06 58.2 73 39.7
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 1.8e-06 58.2 62 46.8
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 1.8e-06 58.2 62 46.8
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 1.8e-06 58.2 54 51.9
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.8e-06 58.2 54 46.3
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 1.8e-06 58.2 57 42.1
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.8e-06 58.2 70 41.4
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.8e-06 58.2 94 31.9
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 1.8e-06 58.2 102 33.3
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.4e-06 57.8 93 31.2
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 2.4e-06 57.8 62 46.8
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 2.4e-06 57.8 62 46.8
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.4e-06 57.8 156 28.8
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.4e-06 57.8 57 42.1
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 2.4e-06 57.8 70 40.0
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 2.4e-06 57.8 61 42.6
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 3.1e-06 57.4 62 46.8
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 3.1e-06 57.4 59 45.8
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 3.1e-06 57.4 58 46.6
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 3.1e-06 57.4 75 38.7
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 3.1e-06 57.4 58 41.4
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.1e-06 57.4 59 49.2
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 4.1e-06 57.0 57 49.1
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.1e-06 57.0 54 50.0
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 4.1e-06 57.0 64 40.6
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 4.1e-06 57.0 81 34.6
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 4.1e-06 57.0 54 40.7
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 5.3e-06 56.6 62 38.7
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 5.3e-06 56.6 99 35.4
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 5.3e-06 56.6 51 47.1
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 5.3e-06 56.6 51 47.1
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.3e-06 56.6 51 47.1
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 7.0e-06 56.2 91 35.2
CSS0018366 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.0e-06 56.2 93 37.6
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 7.0e-06 56.2 51 41.2
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 7.0e-06 56.2 58 39.7
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 9.1e-06 55.8 62 41.9
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 9.1e-06 55.8 96 32.3
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 9.1e-06 55.8 54 42.6
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 9.1e-06 55.8 54 42.6
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 9.1e-06 55.8 60 43.3
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 9.1e-06 55.8 50 46.0
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 9.1e-06 55.8 152 28.3
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 9.1e-06 55.8 70 41.4
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 9.1e-06 55.8 179 28.5


User provided reference genes

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