Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.0e-257 892.9 449 100.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 6.9e-230 800.4 450 91.8
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 4.7e-186 654.8 453 73.1
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.0e-180 637.1 475 69.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.3e-179 631.7 450 72.7
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 7.3e-179 630.9 448 72.1
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.6e-178 629.8 442 71.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.8e-177 626.3 457 70.9
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.8e-177 626.3 460 70.4
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.3e-177 625.9 451 70.7
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.6e-176 622.5 452 70.4
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 3.4e-176 622.1 468 69.9
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 7.5e-176 620.9 448 71.0
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.7e-175 619.8 491 66.8
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.9e-175 619.0 451 70.7
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 6.4e-175 617.8 451 70.1
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 7.8e-173 610.9 451 69.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.0e-172 610.5 452 69.2
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.7e-172 609.8 448 69.9
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.7e-172 609.8 426 73.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.1e-171 607.1 452 68.4
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.9e-171 606.3 451 68.5
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 6.2e-170 601.3 451 68.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 5.2e-169 598.2 455 68.6
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.5e-168 596.7 451 67.6
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.6e-168 595.9 489 64.4
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.4e-168 595.5 467 67.7
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 6.4e-167 591.3 447 67.1
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 6.4e-167 591.3 450 66.7
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 6.4e-167 591.3 442 69.5
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.6e-165 586.6 442 67.4
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 6.0e-165 584.7 447 66.7
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 7.3e-163 577.8 435 67.8
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.4e-161 573.5 457 66.3
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.5e-160 570.1 452 66.6
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.6e-160 569.3 440 67.5
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 3.4e-160 568.9 454 65.9
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 5.8e-160 568.2 452 65.7
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 7.5e-160 567.8 446 66.8
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 9.9e-160 567.4 459 65.6
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.9e-159 565.8 472 64.8
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 3.7e-159 565.5 447 66.7
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 3.7e-159 565.5 446 66.8
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 8.3e-159 564.3 454 65.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.4e-158 563.5 513 59.1
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 9.2e-158 560.8 445 67.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 9.2e-158 560.8 451 67.2
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.2e-157 560.5 447 66.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.7e-156 556.6 451 64.7
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.9e-156 555.4 495 60.0
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.6e-156 554.3 447 64.4
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 5.6e-155 551.6 458 64.6
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.2e-154 550.4 445 66.1
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.6e-154 550.1 451 63.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 2.1e-154 549.7 447 64.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.1e-153 547.4 440 64.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 8.9e-153 544.3 438 64.2
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.0e-152 543.1 450 64.2
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 7.6e-152 541.2 460 64.3
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.7e-151 540.0 436 63.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 4.9e-151 538.5 454 61.5
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.9e-151 538.5 451 62.1
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 6.4e-151 538.1 463 62.0
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 8.4e-151 537.7 442 64.3
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 8.4e-151 537.7 444 61.7
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.1e-150 537.3 454 61.5
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.4e-150 537.0 436 62.8
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.1e-149 533.1 426 65.7
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.1e-149 533.1 442 64.5
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 2.7e-149 532.7 437 62.7
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 7.8e-149 531.2 454 62.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 7.8e-149 531.2 432 63.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-148 530.4 455 61.3
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.3e-148 530.4 453 61.6
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.1e-147 527.3 438 61.2
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 7.3e-147 524.6 454 60.1
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.2e-146 523.9 454 61.9
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.2e-146 523.9 454 61.9
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 3.6e-146 522.3 438 62.3
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 6.2e-146 521.5 467 58.9
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 2.4e-145 519.6 443 62.5
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 2.4e-145 519.6 471 57.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 9.0e-145 517.7 438 61.0
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 5.8e-144 515.0 453 61.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 9.9e-144 514.2 452 60.4
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.2e-143 513.1 445 61.1
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.8e-143 512.3 415 64.3
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.4e-142 510.4 447 59.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 3.2e-142 509.2 438 60.3
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.2e-142 509.2 394 67.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 2.7e-141 506.1 512 54.1
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.0e-140 504.2 436 59.2
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.9e-139 500.0 438 59.4
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 4.3e-139 498.8 421 65.6
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.3e-138 497.3 441 61.2
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.1e-138 496.5 473 57.5
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.6e-138 495.7 447 59.1
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 6.9e-137 491.5 448 60.0
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.1e-129 466.1 386 64.8
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 6.9e-129 464.9 465 55.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.6e-128 463.0 480 52.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.6e-128 463.0 449 57.2
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 5.8e-128 461.8 471 56.3
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.3e-127 460.7 450 56.9
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.5e-123 447.2 470 52.8
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 3.2e-118 429.5 384 59.6
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 6.3e-114 415.2 297 72.1
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 4.3e-107 392.5 450 50.2
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 6.3e-106 388.7 359 59.3
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 6.9e-105 385.2 447 48.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 4.2e-102 375.9 282 68.8
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.6e-96 356.7 487 43.3
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.5e-94 350.1 366 56.3
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 5.7e-91 339.0 521 40.7
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.2e-88 331.3 482 42.9
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.6e-85 320.9 299 57.2
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.1e-73 281.6 619 33.1
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 4.2e-70 269.6 394 42.6
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.0e-55 220.3 463 33.3
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.8e-52 211.1 451 34.4
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 2.9e-50 203.8 492 32.5
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 4.7e-45 186.4 187 56.1
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.4e-44 184.9 250 44.0
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.7e-37 159.8 246 43.9
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 5.2e-36 156.4 216 44.4
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.8e-29 134.0 112 60.7
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 9.0e-28 129.0 194 47.4
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 9.9e-27 125.6 194 46.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.6e-24 116.7 182 42.9
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.0e-20 102.4 239 32.6
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 8.4e-18 95.9 82 59.8
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.9e-17 94.7 71 56.3
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 7.1e-17 92.8 110 50.0
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 9.3e-17 92.4 126 42.1
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.0e-15 89.0 112 49.1
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.6e-13 81.6 85 49.4
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.5e-11 75.1 65 60.0
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 1.0e-10 72.4 92 47.8
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 3.8e-10 70.5 92 46.7
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.1e-09 66.2 59 64.4
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 3.5e-08 63.9 111 42.3
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 2.3e-07 61.2 146 34.9
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 2.3e-07 61.2 78 48.7
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.1e-06 58.9 34 76.5


User provided reference genes

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