Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.2e-90 335.1 177 100.0
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.4e-48 196.1 164 70.7
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 6.0e-44 181.4 179 57.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 9.6e-42 174.1 188 53.2
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.8e-40 169.9 173 58.4
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.4e-40 169.5 178 56.2
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.1e-40 169.1 175 55.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.1e-40 169.1 185 55.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 5.3e-40 168.3 179 53.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-39 166.8 185 55.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.4e-39 165.6 186 53.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.8e-39 164.9 191 52.4
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-38 163.7 178 55.1
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-38 162.9 179 55.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 2.2e-38 162.9 173 53.8
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 2.9e-38 162.5 182 52.7
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-36 157.1 188 45.7
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.1e-36 156.4 193 50.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 2.7e-36 156.0 177 53.7
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.7e-36 156.0 186 51.6
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 3.5e-36 155.6 174 52.3
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 3.5e-36 155.6 171 56.7
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 7.9e-36 154.5 193 53.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 7.9e-36 154.5 168 59.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.3e-35 153.7 172 52.3
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 5.1e-35 151.8 188 50.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.1e-34 150.6 189 50.3
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.9e-34 149.8 184 47.8
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.5e-34 149.4 181 49.7
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.5e-34 149.4 180 50.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 5.6e-34 148.3 182 50.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 5.6e-34 148.3 179 49.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 5.6e-34 148.3 183 51.4
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 9.6e-34 147.5 177 50.8
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-33 147.1 179 49.2
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 2.1e-33 146.4 174 54.0
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-33 145.2 185 48.1
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.1e-33 144.4 175 49.1
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.1e-33 144.4 184 47.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.4e-32 143.7 191 49.2
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-32 142.9 182 44.5
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.4e-32 142.9 175 48.6
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 5.3e-32 141.7 189 45.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.3e-32 141.7 173 47.4
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 6.9e-32 141.4 177 49.2
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.0e-32 141.0 185 46.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-31 140.6 178 47.8
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.2e-31 140.6 166 49.4
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.2e-31 140.6 182 44.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.5e-31 140.2 176 47.7
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.0e-31 139.8 170 50.6
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.0e-31 139.8 175 52.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.0e-31 139.8 174 46.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.6e-31 139.4 172 50.6
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 2.6e-31 139.4 189 45.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-31 138.7 184 44.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 7.6e-31 137.9 173 47.4
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.3e-30 137.1 178 46.6
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.2e-30 136.3 177 46.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.2e-30 136.3 178 47.2
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.2e-30 136.3 178 47.2
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 2.2e-30 136.3 185 47.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.9e-30 136.0 192 43.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.8e-30 135.6 193 43.0
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.8e-30 135.6 179 47.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 4.9e-30 135.2 185 47.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 6.4e-30 134.8 186 44.6
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 6.4e-30 134.8 173 48.0
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.4e-30 134.8 182 41.8
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 8.4e-30 134.4 171 47.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.9e-29 133.3 181 46.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-29 132.9 190 42.1
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.2e-29 132.1 188 42.0
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.2e-29 132.1 179 45.8
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.4e-29 131.7 190 42.1
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 7.1e-29 131.3 189 46.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 9.3e-29 131.0 175 45.7
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-28 130.6 166 47.0
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-28 130.6 185 44.3
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.2e-28 130.6 185 41.6
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-28 130.2 190 43.7
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.6e-28 130.2 184 45.1
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.1e-28 129.8 188 41.0
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 2.7e-28 129.4 170 49.4
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 3.5e-28 129.0 181 45.9
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.5e-28 129.0 188 42.0
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.5e-28 129.0 201 40.8
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.6e-28 128.6 195 41.5
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 6.0e-28 128.3 186 43.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 6.0e-28 128.3 186 43.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 7.9e-28 127.9 179 46.4
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 7.9e-28 127.9 192 43.8
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.9e-28 127.9 192 43.8
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.0e-27 127.5 176 45.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.3e-27 127.1 178 46.1
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.8e-27 126.7 185 43.8
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.3e-27 126.3 191 43.5
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-27 126.3 174 44.3
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.9e-27 125.6 185 43.2
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 5.1e-27 125.2 179 46.4
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-27 125.2 178 46.1
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 5.1e-27 125.2 178 46.1
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.1e-27 125.2 170 44.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.5e-26 123.6 214 39.3
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.5e-26 123.6 171 43.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.9e-26 123.2 177 45.2
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 4.3e-26 122.1 173 46.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.3e-26 122.1 177 44.6
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 5.6e-26 121.7 177 51.4
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.6e-26 121.7 206 42.7
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.6e-26 121.7 175 44.6
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 7.4e-26 121.3 179 45.8
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 9.6e-26 120.9 176 47.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 9.6e-26 120.9 176 47.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 9.6e-26 120.9 176 47.7
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 9.6e-26 120.9 185 44.3
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.6e-25 120.2 181 43.6
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-25 119.8 176 48.3
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.1e-25 119.8 176 47.7
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.1e-25 119.8 176 48.3
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-25 119.0 166 40.4
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.2e-25 118.2 174 41.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.1e-25 117.9 163 46.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 8.1e-25 117.9 176 45.5
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.1e-24 117.5 174 43.7
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.8e-24 116.7 179 43.0
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.8e-24 116.7 171 45.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 3.1e-24 115.9 173 42.2
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.3e-24 115.2 136 49.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-23 113.6 177 42.9
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.6e-23 111.3 175 41.7
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.3e-22 110.5 179 41.3
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.7e-22 110.2 172 40.1
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.2e-22 109.8 167 43.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.2e-22 109.8 167 41.9
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.2e-22 109.8 175 45.1
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 8.4e-22 107.8 173 38.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.1e-21 107.5 179 41.3
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 5.5e-21 105.1 178 39.3
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 7.1e-21 104.8 179 40.8
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.2e-20 104.0 182 42.9
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-20 104.0 146 44.5
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.6e-20 103.6 180 36.7
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.1e-20 103.2 186 38.7
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-19 100.5 166 38.6
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.9e-19 99.0 100 51.0
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.9e-19 99.0 170 41.2
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.7e-19 98.2 159 39.6
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.6e-17 93.6 205 36.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.1e-17 93.2 170 38.8
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.7e-17 92.4 102 49.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 8.2e-17 91.3 171 40.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.1e-16 89.4 171 38.0
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-14 82.0 168 41.7
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-13 79.3 111 44.1
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.2e-13 79.3 173 39.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 5.5e-13 78.6 197 31.5
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-13 78.2 79 53.2
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.1e-12 76.6 122 44.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 7.9e-12 74.7 169 36.1
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-11 73.6 76 51.3
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.3e-11 73.2 209 35.9
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 3.0e-11 72.8 172 38.4
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.0e-11 72.8 179 35.2
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.3e-10 69.3 154 39.0
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 9.7e-10 67.8 124 37.1
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 9.7e-10 67.8 194 30.9
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-09 65.1 78 46.2
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.4e-08 63.9 79 48.1
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.1e-08 62.8 179 29.1
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.1e-08 62.8 135 37.0


User provided reference genes

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