Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G1015 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 8.9e-51 203.4 107 100.0
TWI36G1333 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 8.9e-51 203.4 107 100.0
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 8.7e-14 80.5 49 77.6
Thecc.01G205400 Theobroma cacao HOM05D003340 ORTHO05D003775 2.5e-13 79.0 49 77.6
MBI11_g05791_MAGBIO Magnolia biondii HOM05D003340 ORTHO05D003775 4.3e-13 78.2 49 75.5
Manes.13G057400 Manihot esculenta HOM05D003340 ORTHO05D003775 7.4e-13 77.4 49 77.6
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 1.3e-12 76.6 103 45.6
Glyma.07G060200 Glycine max HOM05D003340 ORTHO05D003775 4.8e-12 74.7 49 71.4
Hma1.2p1_0161F.1_g071770 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 4.8e-12 74.7 48 75.0
Gohir.D11G152366 Gossypium hirsutum HOM05D003340 ORTHO05D003775 8.2e-12 73.9 49 69.4
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 8.2e-12 73.9 49 69.4
Gohir.A11G144700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.1e-11 73.6 49 69.4
Potri.014G197000 Populus trichocarpa HOM05D003340 ORTHO05D003775 1.1e-11 73.6 49 71.4
CANSAT25G3664 Cannabis sativa HOM05D003340 ORTHO05D003775 1.4e-11 73.2 49 73.5
arahy.Tifrunner.gnm1.ann1.JPFK87 Arachis hypogaea HOM05D003340 ORTHO05D003775 2.4e-11 72.4 49 69.4
arahy.Tifrunner.gnm1.ann1.X0XLBA Arachis hypogaea HOM05D003340 ORTHO05D003775 2.4e-11 72.4 49 69.4
Lj3g0018377 Lotus japonicus HOM05D003340 ORTHO05D003775 2.4e-11 72.4 49 69.4
Actinidia23810 Actinidia chinensis HOM05D003340 ORTHO05D003775 5.3e-11 71.2 49 69.4
ATR0743G272 Amborella trichopoda HOM05D003340 ORTHO05D003775 6.9e-11 70.9 48 72.9
PGR083G2718 Punica granatum HOM05D003340 ORTHO05D003775 9.0e-11 70.5 47 68.1
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 2.0e-10 69.3 49 67.3
Sabra14G0133400 Salix brachista HOM05D003340 ORTHO05D003775 3.4e-10 68.6 49 67.3
MD10G1145900 Malus domestica HOM05D003340 ORTHO05D003775 4.5e-10 68.2 51 66.7
Duzib133G0034 Durio zibethinus HOM05D003340 ORTHO05D003775 5.8e-10 67.8 44 72.7
Prupe.8G184300 Prunus persica HOM05D003340 ORTHO05D003775 2.2e-09 65.9 51 62.7
CSS0032864 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 6.5e-09 64.3 40 75.0
Atru.chr6.3490 Acer truncatum HOM05D003340 ORTHO05D003775 8.4e-09 63.9 41 85.4
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 1.1e-08 63.5 49 67.3
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.1e-08 63.5 47 63.8
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 1.1e-08 63.5 48 64.6
Eucgr.K02349 Eucalyptus grandis HOM05D003340 ORTHO05D003775 1.9e-08 62.8 49 55.1
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 3.2e-08 62.0 47 61.7
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 3.2e-08 62.0 47 61.7
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 4.2e-08 61.6 85 43.5
Oeu059436.2 Olea europaea HOM05D003340 ORTHO05D003775 4.2e-08 61.6 47 61.7
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 4.2e-08 61.6 47 61.7
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 5.5e-08 61.2 41 70.7
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 5.5e-08 61.2 48 58.3
Glyma.14G150300 Glycine max HOM05D003340 ORTHO05D003775 5.5e-08 61.2 48 58.3
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 61.7
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 61.7
Phvul.008G161200 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 5.5e-08 61.2 48 58.3
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 59.6
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 61.7
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 61.7
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 5.5e-08 61.2 47 61.7
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 7.1e-08 60.8 47 61.7
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 7.1e-08 60.8 47 61.7
Lalb_Chr11g0065901 Lupinus albus HOM05D003340 ORTHO05D003775 7.1e-08 60.8 47 59.6
PGR044G0115 Punica granatum HOM05D003340 ORTHO05D003775 7.1e-08 60.8 48 58.3
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 9.3e-08 60.5 47 61.7
Ca_12617_v3 Cicer arietinum L. HOM05D003340 ORTHO05D003775 9.3e-08 60.5 47 59.6
Haze_00442 Corylus avellana HOM05D003340 ORTHO05D003775 9.3e-08 60.5 47 59.6
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 9.3e-08 60.5 47 61.7
Atru.chr13.1461 Acer truncatum HOM05D003340 ORTHO05D003775 1.2e-07 60.1 47 59.6
Migut.C01126 Erythranthe guttata HOM05D003340 ORTHO05D003775 1.2e-07 60.1 47 61.7
THA.LOC104806822 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 1.2e-07 60.1 43 62.8
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.6e-07 59.7 41 65.9
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 1.6e-07 59.7 47 59.6
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 1.6e-07 59.7 47 59.6
PSO528G0096 Papaver somniferum HOM05D003340 ORTHO05D003775 1.6e-07 59.7 47 59.6
Phvul.009G125000 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 1.6e-07 59.7 47 57.4
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 1.6e-07 59.7 47 59.6
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 2.1e-07 59.3 47 59.6
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.1e-07 59.3 48 56.2
THA.LOC104817332 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 2.1e-07 59.3 43 62.8
Cpa.g.sc64.87 Carica papaya HOM05D003340 ORTHO05D003775 2.7e-07 58.9 47 59.6
Glyma.06G113100 Glycine max HOM05D003340 ORTHO05D003775 2.7e-07 58.9 47 57.4
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 2.7e-07 58.9 47 57.4
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 2.7e-07 58.9 47 59.6
TWI32G0782 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 2.7e-07 58.9 43 65.1
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 3.5e-07 58.5 47 57.4
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 3.5e-07 58.5 47 57.4
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 3.5e-07 58.5 47 57.4
Cc10_g11880 Coffea canephora HOM05D003340 ORTHO05D003775 3.5e-07 58.5 43 65.1
MD15G1348300 Malus domestica HOM05D003340 ORTHO05D003775 3.5e-07 58.5 48 60.4
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 3.5e-07 58.5 47 61.7
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 4.6e-07 58.2 43 62.8
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.6e-07 58.2 47 57.4
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.6e-07 58.2 47 57.4
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 4.6e-07 58.2 47 57.4
Potri.002G083600 Populus trichocarpa HOM05D003340 ORTHO05D003775 4.6e-07 58.2 43 65.1
Sabra02G0065600 Salix brachista HOM05D003340 ORTHO05D003775 4.6e-07 58.2 43 65.1
Sp6g09610 Schrenkiella parvula HOM05D003340 ORTHO05D003775 4.6e-07 58.2 47 55.3
AL6G42100 Arabidopsis lyrata HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
AT4G08330 Arabidopsis thaliana HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
BcaB05g23940 Brassica carinata HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
BcaC03g16448 Brassica carinata HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
A02p26860 Brassica napus HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
C02p42680 Brassica napus HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
BolSC33t60637H Brassica oleracea HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
BraA02t07697Z Brassica rapa HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
Carub.0006s2689 Capsella rubella HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
CARHR259420 Cardamine hirsuta HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 6.0e-07 57.8 44 59.1
Sed0000027 Sechium edule HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 6.0e-07 57.8 47 55.3
Thhalv10029030m.g Eutrema salsugineum HOM05D003340 ORTHO05D003775 7.9e-07 57.4 47 55.3
Lj1g0019913 Lotus japonicus HOM05D003340 ORTHO05D003775 7.9e-07 57.4 47 55.3
Lj4g0019423 Lotus japonicus HOM05D003340 ORTHO05D003775 7.9e-07 57.4 44 65.9
PGR044G1945 Punica granatum HOM05D003340 ORTHO05D003775 7.9e-07 57.4 47 59.6
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 7.9e-07 57.4 47 55.3
ClCG11G015750 Citrullus lanatus HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 55.3
MELO3C010478.2 Cucumis melo HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 55.3
CsaV3_4G028260 Cucumis sativus L. HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 55.3
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 55.3
FvH4_2g17280 Fragaria vesca HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 57.4
FAN15G0686 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 57.4
FAN27G2034 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.0e-06 57.0 47 57.4
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.0e-06 57.0 48 54.2
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.0e-06 57.0 48 54.2
Aa31LG9G14230 Aethionema arabicum HOM05D003340 ORTHO05D003775 1.3e-06 56.6 43 58.1
CiPaw.06G030900 Carya illinoinensis HOM05D003340 ORTHO05D003775 1.3e-06 56.6 43 62.8
MD08G1162700 Malus domestica HOM05D003340 ORTHO05D003775 1.3e-06 56.6 48 58.3
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.3e-06 56.6 41 63.4
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 1.8e-06 56.2 48 60.4
COL.COLO4_36312 Corchorus olitorius HOM05D003340 ORTHO05D003775 1.8e-06 56.2 47 55.3
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 1.8e-06 56.2 43 58.1
Prupe.1G497200 Prunus persica HOM05D003340 ORTHO05D003775 1.8e-06 56.2 44 63.6
Duzib041G0745 Durio zibethinus HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 53.2
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 55.3
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 55.3
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 55.3
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 2.3e-06 55.8 43 58.1
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 55.3
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 2.3e-06 55.8 47 59.6
CiPaw.05G221600 Carya illinoinensis HOM05D003340 ORTHO05D003775 3.0e-06 55.5 43 60.5
HanXRQChr04g0125231 Helianthus annuus HOM05D003340 ORTHO05D003775 3.0e-06 55.5 47 57.4
Potri.005G178000 Populus trichocarpa HOM05D003340 ORTHO05D003775 3.0e-06 55.5 38 71.1
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 3.9e-06 55.1 45 62.2
FAN27G0698 Fragaria x ananassa HOM05D003340 ORTHO05D003775 3.9e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.VCNM2G Arachis hypogaea HOM05D003340 ORTHO05D003775 5.1e-06 54.7 45 64.4
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 5.1e-06 54.7 44 61.4
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 5.1e-06 54.7 44 61.4
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 5.1e-06 54.7 47 57.4
Lj1g0013118 Lotus japonicus HOM05D003340 ORTHO05D003775 5.1e-06 54.7 48 56.2
RcHm_v2.0_Chr6g0295821 Rosa chinensis HOM05D003340 ORTHO05D003775 5.1e-06 54.7 44 61.4
GSVIVG01008867001 Vitis vinifera HOM05D003340 ORTHO05D003775 5.1e-06 54.7 47 57.4
Solyc06g048850.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 6.7e-06 54.3 60 46.7
RcHm_v2.0_Chr6g0281781 Rosa chinensis HOM05D003340 ORTHO05D003775 8.7e-06 53.9 47 53.2
SalBow1G3156 Salvia bowleyana HOM05D003340 ORTHO05D003775 8.7e-06 53.9 48 54.2
SalBow1G8517 Salvia bowleyana HOM05D003340 ORTHO05D003775 8.7e-06 53.9 48 54.2
Sopen06g015140 Solanum pennellii HOM05D003340 ORTHO05D003775 8.7e-06 53.9 60 46.7
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 8.7e-06 53.9 47 53.2


User provided reference genes

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