Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 0.0e+00 2032.7 1078 100.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 0.0e+00 1652.1 1083 82.7
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 5.3e-260 901.7 1092 50.0
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.6e-248 863.6 1090 49.3
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.4e-247 860.5 1091 49.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.6e-240 837.0 1092 47.7
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.8e-239 833.6 1094 48.5
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.8e-236 823.5 1088 47.8
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.5e-230 803.9 1093 46.8
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.3e-230 802.7 1089 46.9
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 2.4e-228 796.6 1090 47.2
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 9.4e-225 784.6 1089 46.9
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 8.8e-223 778.1 1087 47.3
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.1e-220 769.2 1086 45.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.7e-219 765.0 1086 45.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.6e-216 756.1 1086 44.8
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 7.0e-212 741.9 1101 45.5
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 9.5e-209 731.5 1086 45.3
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 2.2e-205 720.3 1068 45.4
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.2e-203 714.5 1089 44.2
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 2.0e-203 713.8 1017 46.5
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.8e-200 703.4 1121 44.2
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 8.9e-199 698.4 1087 44.2
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 4.7e-192 676.0 1050 45.1
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.5e-187 659.8 1078 42.4
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.3e-178 630.6 1097 41.6
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.1e-172 611.7 1092 41.1
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.8e-168 597.0 1087 39.5
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.8e-167 594.3 1092 41.2
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.4e-167 594.0 1110 39.9
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.1e-164 585.1 1091 39.5
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 2.1e-160 570.9 1134 38.7
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.1e-159 568.5 1088 39.9
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.4e-158 563.5 1137 36.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-155 555.1 1097 40.4
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 7.9e-155 552.4 1101 38.6
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.0e-154 550.4 1135 37.2
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.7e-154 549.3 1096 39.9
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 7.4e-153 545.8 1139 36.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 7.4e-153 545.8 1113 37.0
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 4.2e-148 530.0 1090 38.6
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 4.2e-148 530.0 1130 37.9
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 9.3e-148 528.9 1089 37.3
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 6.0e-147 526.2 1095 38.4
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.9e-145 521.2 1128 36.4
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.7e-144 516.9 1100 35.6
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.9e-141 507.3 888 42.2
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 5.5e-140 503.1 1097 35.2
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 6.7e-138 496.1 1101 37.2
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.9e-137 494.6 1095 37.0
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 2.5e-137 494.2 1099 36.9
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.8e-136 490.7 952 40.5
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 4.5e-134 483.4 1087 36.3
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.9e-133 480.7 1122 35.0
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-132 478.8 1107 35.3
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 9.4e-132 475.7 1144 34.7
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 7.9e-131 472.6 1109 35.3
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.8e-130 471.5 1101 35.8
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 9.7e-129 465.7 1118 34.3
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.0e-126 458.0 845 39.9
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.3e-125 455.3 1104 35.0
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 2.2e-125 454.5 1096 35.0
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 5.5e-124 449.9 1100 35.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.2e-122 443.4 1081 35.6
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.0e-114 419.1 1084 33.5
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 5.2e-114 416.8 1127 32.3
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-111 407.5 1060 34.8
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.7e-110 402.9 1107 33.1
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.6e-107 395.2 1081 34.0
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.5e-105 386.3 1097 32.9
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 3.7e-104 384.0 1061 32.8
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 4.4e-97 360.5 448 51.6
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 3.1e-95 354.4 1099 32.3
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 3.1e-95 354.4 1094 30.8
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 5.6e-92 343.6 1084 30.6
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.6e-91 342.0 1085 31.2
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.6e-91 342.0 864 34.4
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 2.8e-91 341.3 1096 30.7
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.8e-90 338.6 1092 30.4
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.8e-90 338.6 1112 32.5
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 4.0e-90 337.4 1088 30.8
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 9.8e-89 332.8 1086 30.4
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 2.9e-88 331.3 1095 30.0
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 8.3e-88 329.7 1094 29.4
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.4e-87 328.2 1089 30.4
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 3.2e-87 327.8 1085 31.1
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 3.3e-84 317.8 1086 30.1
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 2.1e-83 315.1 1091 32.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.4e-82 312.4 812 36.2
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 2.6e-81 308.1 885 34.8
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 8.3e-80 303.1 1098 28.6
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 4.1e-79 300.8 1087 29.8
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 7.0e-79 300.1 1097 28.3
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.6e-78 298.9 1087 30.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.5e-76 292.4 1090 28.8
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.6e-75 288.9 957 29.9
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 2.8e-75 288.1 1090 29.4
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 4.0e-74 284.3 1095 29.7
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 4.4e-73 280.8 1088 28.5
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.2e-64 251.9 1259 28.1
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 3.8e-64 251.1 235 54.0
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.9e-63 248.8 361 46.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.4e-58 231.9 1012 29.7
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.1e-54 218.8 418 38.8
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 2.4e-50 205.3 208 50.5
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 8.4e-48 196.8 1075 26.6
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.9e-47 195.7 1072 26.9
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 3.0e-45 188.3 686 33.7
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 1.5e-41 176.0 404 37.1
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 2.8e-35 155.2 120 59.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 5.3e-26 124.4 1120 23.5
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.6e-22 112.8 1112 21.8
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 6.3e-19 100.9 243 29.6
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 5.3e-18 97.8 247 34.8
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 7.7e-17 94.0 253 35.6
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 7.7e-17 94.0 212 34.0
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 6.5e-16 90.9 223 33.2
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.9e-15 89.4 973 22.9
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.2e-15 88.6 251 33.1
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 7.2e-15 87.4 253 34.0
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 9.4e-15 87.0 938 24.2
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.7e-14 85.5 132 40.2
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 4.7e-14 84.7 213 33.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.4e-13 83.2 932 24.0
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.8e-13 82.8 132 40.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.3e-13 82.4 977 21.8
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.0e-13 82.0 231 30.3
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 3.9e-13 81.6 208 33.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 8.8e-13 80.5 211 29.4
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 8.8e-13 80.5 276 27.9
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.5e-12 79.7 132 38.6
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.0e-12 79.3 262 26.3
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.0e-12 79.3 207 30.4
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.6e-12 79.0 260 28.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 4.4e-12 78.2 289 30.4
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 4.4e-12 78.2 71 52.1
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.7e-12 77.8 976 22.3
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 7.4e-12 77.4 220 28.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 9.7e-12 77.0 976 21.4
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.7e-11 76.3 168 30.4
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.7e-11 76.3 218 29.8
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 3.7e-11 75.1 217 32.3
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.7e-11 75.1 221 28.5
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.8e-11 74.7 115 41.7
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 4.8e-11 74.7 535 23.9
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 6.3e-11 74.3 220 30.9
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.1e-10 73.6 225 30.7
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.1e-10 73.6 209 30.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.1e-10 73.6 240 27.9
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 4.1e-10 71.6 206 31.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 5.3e-10 71.2 395 27.6
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 5.3e-10 71.2 216 28.7
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.0e-10 70.9 974 22.5
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 9.1e-10 70.5 236 30.5
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.2e-09 70.1 67 52.2
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.5e-09 69.7 207 29.5
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 3.5e-09 68.6 210 30.5
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.5e-09 68.2 207 29.0
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 7.7e-09 67.4 222 30.2
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.3e-08 66.6 200 30.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.3e-08 66.6 200 30.5
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.3e-08 66.6 168 27.4
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.7e-08 66.2 523 23.3
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 417 24.9
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 929 20.2
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.0e-08 64.7 980 22.0
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 5.0e-08 64.7 964 22.4
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.1e-07 63.5 210 26.7
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.9e-07 62.8 210 26.7
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 3.2e-07 62.0 169 29.0
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 4.2e-07 61.6 941 20.1
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 5.5e-07 61.2 453 25.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 9.4e-07 60.5 410 23.7
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.1e-06 59.3 185 29.2
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.7e-06 58.9 217 29.5
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 8.0e-06 57.4 186 28.0
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 8.0e-06 57.4 967 22.1


User provided reference genes

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