Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1659.8 838 100.0
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1659.8 838 100.0
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1407.9 838 83.5
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1396.3 837 82.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1387.1 838 81.9
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1385.9 838 82.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1382.5 838 82.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1382.5 838 81.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 838 82.3
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 838 81.1
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1379.8 840 81.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1374.4 838 80.9
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1373.2 838 81.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1371.3 838 80.9
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1369.8 838 80.2
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1368.2 868 80.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1363.6 838 80.5
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 838 80.2
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 830 81.4
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 838 79.8
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 838 80.8
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 839 80.1
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 826 81.1
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 80.2
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1349.3 858 80.0
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 840 79.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 840 79.2
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 839 79.9
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 839 79.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 838 80.4
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 838 79.6
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 79.8
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 78.8
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 839 78.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 915 74.9
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 839 79.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 838 78.5
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1327.0 839 77.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1321.6 839 77.7
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1320.8 838 79.2
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 838 77.7
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 838 77.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1317.8 838 77.7
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 838 77.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 838 77.8
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 838 77.7
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 844 78.2
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 838 76.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 77.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 77.7
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 77.7
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 838 77.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 838 77.7
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 839 77.6
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 838 77.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1309.7 838 77.8
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 839 77.2
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 838 77.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 904 74.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 838 76.8
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 838 77.7
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 845 77.3
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1304.3 840 77.1
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1303.1 967 70.2
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 845 76.7
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 838 75.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 851 77.1
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1298.1 858 76.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 840 76.9
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 911 73.2
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 845 76.4
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1295.4 845 76.3
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1295.4 843 76.0
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1293.9 838 77.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1283.5 870 74.7
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 841 75.1
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 911 71.0
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1253.0 826 75.5
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1250.3 867 73.2
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1248.0 819 76.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1245.7 838 74.9
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1241.5 838 76.0
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1228.4 825 75.2
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1227.2 781 77.0
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1221.5 842 73.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1219.1 751 80.8
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1216.1 775 78.8
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1211.8 764 77.9
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1211.4 765 77.9
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 767 77.8
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1206.0 788 75.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 842 73.0
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1179.1 839 71.5
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 839 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1144.0 823 69.3
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 858 66.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1125.5 693 80.8
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1120.5 844 66.2
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 748 72.3
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1103.2 838 68.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1091.3 839 66.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1090.9 697 76.5
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 5.7e-312 1073.9 853 63.4
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 4.3e-302 1041.2 853 62.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.7e-302 1040.0 839 62.7
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.3e-293 1013.1 654 76.8
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.8e-269 931.4 845 60.9
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.0e-246 856.3 642 68.4
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.8e-231 806.6 542 72.3
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.2e-214 750.7 513 72.3
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.1e-211 740.0 418 86.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.6e-158 564.3 329 84.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.3e-122 444.1 300 77.7
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 8.9e-114 415.6 254 81.5
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 3.4e-105 387.1 285 69.1
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-102 377.1 307 61.6
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.2e-97 362.1 194 89.7
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.1e-90 337.4 263 67.3
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.6e-89 334.3 389 50.4
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-67 262.3 275 53.8
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 3.7e-67 260.8 182 72.5
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.0e-53 214.2 139 77.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.9e-48 198.0 140 70.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 7.2e-47 193.4 117 82.1
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.8e-34 152.1 83 83.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 8.6e-32 143.3 82 87.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.9e-31 142.1 94 73.4
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 5.4e-26 124.0 85 68.2
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.0e-24 119.8 76 75.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.7e-24 119.0 133 51.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 6.6e-24 117.1 73 80.8
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 7.3e-23 113.6 84 66.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.6e-22 111.3 67 82.1
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.6e-15 87.4 105 51.4
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.2e-14 86.3 61 68.9
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.1e-10 70.5 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.7e-08 65.9 47 68.1
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 3.9e-08 64.7 41 75.6


User provided reference genes

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